Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_0078 |
Symbol | lysS |
ID | 5207011 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | + |
Start bp | 92787 |
End bp | 94256 |
Gene Length | 1470 bp |
Protein Length | 489 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640593710 |
Product | lysyl-tRNA synthetase |
Protein accession | YP_001274469 |
Protein GI | 148654264 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00518607 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.367083 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAACTCA ACGAACTTCA ACAACAGCGC CTGGCAAAAC TGGAACGCTT GCGCGCAGCC GGCATCGACC CGTATCCGCC GCGTACCCGG CGCACCCATA CGATTGGCTT CGTGCTTGCC AGTTTCGACC AGTTGATGGA ACGCGGAGAA CAGGTCACCG TCGCCGGGAG AATTGTGGGC GCCCGTCGGA TTCTGGGCAA ACTGGCATTT GCCCACATCG AAGACGAGTC GGGCCGCATC CAGATCTGGC TCAGTCGCGG CGACATCGGC GACGAATGGT TCGACCGGTT TCGCGATGAC CTCGATACGT TCGACATTGT CGAAGCCACG GGAACGTTGC GCCGCACGCA ACGCGGCGAG CCTTCGGTGT TCGTCGAGCG CCTGGGGGTG CTGGCAAAAT CGCTCAACCC GCCGCCGGAA AAGTGGCATG GTCTTTCGGA CATCGAAGAG CGTCATCGTC AACGCTACCT CGACCTGATC GTCAACCCTG AAGTGCGCGA CGTGTTTCGC ACACGCGCGA AGATCGTCAG CACAATGCGG CGCTTCCTTG ACGAACGCGG CTTTCTTGAG GTGGAGACGC CAACCCTGCA ACCGATCTAC GGCGGCGCTT CGGCCCGCCC GTTCATCACG CACCATAACC AGTTGAAGCA GGATCTCTAT CTGCGCATCG CCGTCGAACT CTACCTGAAG CGCCTGATCG TCGGCGGCTT TGAGCGCGTC TATGAGATCA GCAAGGTTTT TCGCAACGAA GGGGTTGATC GTACCCACAA CCCTGAGTTC ACGATGATGG AATGTTACCA GGCGTATGCC GATTACAACG ATATGATGCG CCTGGTCGAA GACCTGTACC GGACCCTGGC GCTGGAAGTC GCTGGCAGCA CAACCATTGT CTTTCAGGGA CACACTATCG ATTTCGGTCC TGCGTGGCAG CGTGTTTCGA TCCCGACGGC GATTGCCGCG CGCACCGGCA TCGACATTCT CGAACTCACC GAACTCGAAC CGTTGCAACG AGCGATCCGC GCAGTCGGGC TGAAGGTCGA TCTCAAACCC AGTTGGGGCA AACAGGTTGA CGAGATCTTT AGCGTTTATG TGCAACCAGA ATTGATCCAG CCAACGTTCG TTATCGATCA TCCGGTGGCG CTGTCGCCGC TGGCGAAACG TCGTCCCGAT CAACCGCTGC TGGTGGAACG CTTCGAGCCA ATCGTGGCTG GCATGGAAGT CGGCAATGCG TTTACCGAAT TGAACGATCC GCTCGACCAG GAGCAGCGTT TTCTGGAACA GGGGCGCGCG TATGATGCTG GCGACGATGA AGCGCAACAG ATGGACATTG ACTTCCTCAA TGCGCTGATG TATGGTATGC CGCCAACCGG CGGGTTAGGC ATCGGTATCG ACCGGACGGT GATGCTGTTC ACCGATCAAC CGAGCATCCG CGAAGTCATC CTGTTCCCGC ACATGCGTCC GCGTGATTGA
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Protein sequence | MELNELQQQR LAKLERLRAA GIDPYPPRTR RTHTIGFVLA SFDQLMERGE QVTVAGRIVG ARRILGKLAF AHIEDESGRI QIWLSRGDIG DEWFDRFRDD LDTFDIVEAT GTLRRTQRGE PSVFVERLGV LAKSLNPPPE KWHGLSDIEE RHRQRYLDLI VNPEVRDVFR TRAKIVSTMR RFLDERGFLE VETPTLQPIY GGASARPFIT HHNQLKQDLY LRIAVELYLK RLIVGGFERV YEISKVFRNE GVDRTHNPEF TMMECYQAYA DYNDMMRLVE DLYRTLALEV AGSTTIVFQG HTIDFGPAWQ RVSIPTAIAA RTGIDILELT ELEPLQRAIR AVGLKVDLKP SWGKQVDEIF SVYVQPELIQ PTFVIDHPVA LSPLAKRRPD QPLLVERFEP IVAGMEVGNA FTELNDPLDQ EQRFLEQGRA YDAGDDEAQQ MDIDFLNALM YGMPPTGGLG IGIDRTVMLF TDQPSIREVI LFPHMRPRD
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