| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3952 |
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| Symbol | |
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| ID | 5192019 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4456046 |
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| End bp | 4456861 |
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| Gene Length | 816 bp |
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| Protein Length | 271 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640588425 |
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| Product | hypothetical protein |
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| Protein accession | YP_001269260 |
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| Protein GI | 148549158 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG5424] Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0117815 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00400212 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | TTGGAAATCA CAAGGATCAA GGAGCTGAAA GTGATTGACG CATTCGTTCG TATCGGGCCT
TTGATGGACC CCGCCAGTTA CCCCCAATGG GCCCAGCAAC TGATTGAAGA CTGCCGCGAG
AGCAAGCGCC GGGTGGTTGA GCATGAGTTT TATGCGCGTC TACGCGATGG CCAGCTGAAG
CAATCGACCA TCCGTCAGTA CCTGATCGGT GGCTGGCCGG TGGTGGAGCA GTTTTCGTTG
TACATGGCGC ATAACCTGAC CAAGACCCGC TACGGCCGGC ATCAGGGCGA GGACATGGCG
CGGCGCTGGC TGATGCGCAA CATCCGCGTC GAGCTCAACC ATGCCGATTA CTGGGTGAAC
TGGTGCCAGG CGCACGGTGT GCACCTGCAC GAGTTGCAGG CGCAAGAAGT GCCGCCCGAG
CTGAACGGCC TGAACGACTG GTGCTGGCGG GTGTGCGCCA CCGAAAACCT GGCCATTTCC
ATGGCGGCGA CCAACTACGC CATCGAAGGC GCGACCGGTG AATGGTCGGC GGTGGTGTGC
TCGACCGACA CCTATGCGCA GGGGTTCCCT GAAGAAGGGC GCAAGCGGGC GATGAAGTGG
CTGAAGATGC ATGCCCAGTA TGACGATGCG CACCCGTGGG AGGCGCTGGA AATCATCTGT
ACCCTGGCCG GTGAGAACCC CACCCTGGGG TTGCGGACCG AGCTGCGCAG GGCGATCTGC
AAGAGTTACG ACTGCATGTT CCTGTTCCTG GAACGCTGCA TGCAGCTGGA AGGGCGCCAG
CAAGGCCGTA TGCGGCCGGC GTTGGCTGCG GGCTGA
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| Protein sequence | MEITRIKELK VIDAFVRIGP LMDPASYPQW AQQLIEDCRE SKRRVVEHEF YARLRDGQLK
QSTIRQYLIG GWPVVEQFSL YMAHNLTKTR YGRHQGEDMA RRWLMRNIRV ELNHADYWVN
WCQAHGVHLH ELQAQEVPPE LNGLNDWCWR VCATENLAIS MAATNYAIEG ATGEWSAVVC
STDTYAQGFP EEGRKRAMKW LKMHAQYDDA HPWEALEIIC TLAGENPTLG LRTELRRAIC
KSYDCMFLFL ERCMQLEGRQ QGRMRPALAA G
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