| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2615 |
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| Symbol | |
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| ID | 5192853 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 2981534 |
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| End bp | 2985736 |
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| Gene Length | 4203 bp |
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| Protein Length | 1400 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640587068 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001267934 |
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| Protein GI | 148547832 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
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| COG ID | [COG3209] Rhs family protein
[COG4104] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.160506 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCGAAG CGGCCAGGTT CGGCGACGAG ATATCGCACA CCAGCGCGCT GGGGGGCTTC
CTGATCGGGG CCGCCCTGGG GATTGCGCTG GTGGCCACGG TGGCCATCGC CACGTTCACC
TGCGGGTTCG GCGTGGCCTT GCTGGCCGGC CTCGCAGCCG GCATCGGGGG CAGCTTGCTG
ACTGCCGCCG GAGAGGCGAT AGGCAGTATG TTCTCGTCCC CCTCAGGGAC GATAACCACT
GCCTCACCCA ACGTGTTCAT CAACAGCCGC AAGGCCGCCC GCGTCGAAAA AAGCATCGGT
GCCTGCGACA AGCACCCAGG GCCGGTGCAG ATTGCCGAAG GCTCGACCAA CGTCTTCATC
AACAGCGTCG CCGCCGCGCG CAAGGGCGAC AAGCTGACCT GCGGCGCCAC CATTTCCGGT
GGTTCGGACA ACGTCATCAT CGGCGGCGGC ACCTACCGTT ACCTGCCCGT GGACGATGAA
GTCCCGGAGT GGCTGCGCAC CACCGTGGAT GTGCTGATGG CCATCGCCGG TGCCGCAGGC
GGTATCGCCC AGCTGATCAA GGCGGGTACC CAGGCCGGCA TGAAAGCCGT CATGCCTTGC
GCGCTGAAGT TCACGGCCGG CTTCGTCGCC GGTGAGGTGG CCAGCCGTTA CGTGGTCGAA
CCCGTGGCCC GCAAGGCTAT CGGCGGCCTG GTCGGCAACC CCGTCGACCT CACGACGGGC
CGCAAGCTGA TCCCCGATGA AATCGACTTC AGCCTGCCGG GCCTGATGCC GATCGAGTGG
TCGCGCTTCT ACGCCAGCGA CCTGACGGTC GACAGCGTAC TCGGCCGCGG CTGGGTGCTG
CCCTGGGAGC AGAGCCTGCG CCGCCAGGGG GCATTCATCT ACCTCACCGA CAACCAGGGC
CGCGAAGTCC CGTTCGTGAC CCTGCAACCG GGGCAGCGCA TCTACAACCC GCACGAGCAG
GTGTACCTGG TGTGCACCGA GGGCGGCCAC TACATCCTGC AGACCCTCGA TAACCTGTTC
TTCTACTTCG GCGAAGTGCC AGACACCAAC ACCGAAGTGC CGCTGCAGCG TATCGAGAAC
GTCCTCGGCC ACTTCCTGCA CTTCACCCGC ACGCCCGACG GCACACTGAC CGACATCAGC
GCCACCGGCG GCACCCGCGT GCACCTGCAC TACGACAACC CGCTGGGCCG CCTGACCGAC
ATCAAGCGCG TGGTGAACAA CGAAGCGGTG GAAACGCTTA CCCAGTACCG CTACGACGAA
CACGGCCAGC TGAGCGCGGT GATCAACCGC AACGGCGACA CCGTGCGCAG CTTCAGCTAC
GCCGACGGCC TGATGGTGAC CCACAGCAAC GCGCTGGGGC TGGGCTGCCA CTACCGTTGG
CAAACCCTGG GCGACAAGCC ACGTGTGGTC GAACACTGGA CCAGCGACGG CGAGCACTAC
CACTTCCGCT ACGACCTCGA TAGCCGCACC AGCTGGGCCA CCGACGTACT TGGCCGCGAG
TTGGAAGTGC AGTACAACGC CGACCACCGC GTGGTCGCCA GCCGCGATTA TGGCGGCGAG
CGTTACGCCA TCGAGCTGGA CGAAAACGGC AATATGGTTG GCCTGACCTT GCCGGACGGT
AACCGCCTGC AATTCAAGTA CGACGAATTC TCCCGCTTGC TCGAAGAGAC CGACCCGCTC
GGCCGCAGGA CCACCTACGA GTATCACCAC CTGACCACAC TGGTGACCCA GGTCAGCTAC
CCGGATGGCA GCACCTGGCG AGCGCGTTAC GACGACAAGG GCAACCTGCT CGCCGAATTC
GATGCCCTCG GCCAGATGAC CGAGTACCTG AACAGCGATG ACGGCCTGCC GCACACCATC
ATCGATGCGA CCTACAAGTC CAAGTACCTG TGGTGGAACA CCCTGGCCCA GGTCGAGCGC
TACCAGGACT GCTCGGGCAA GAGTACGTAC TACCGCTATG ACGAACGCCA GCACCTGGTG
GCGGTGACCA ATGCGCTAAA CCAGACCACC ACGCTGGAGC GCAAGCCCGA CGGCGAAGTG
CTGCGCATCA GCCACCCGGA CGGCACCACG GAAAGCTTCA CCTACAACGT CTACGGGCAG
GTGCTCAGCC ACACCGACGG CAAGGGCCAG ACCACCCGCC TGATGCGCAC GGCCCGCGGC
CTGCCGAGCA GCCGCCAGGA TGCCAAGGGC CAGCGGGTTC GCTACGAGTA CGACAAGGCC
ATTCGCCTGA CCGCGCTGGT CAACGAGAAC AACGCCACGT ACAGCTTTGC CTACGACGCT
TCGGACCGGC TGAGCGAAGA AGTGCGGGTG GATAACCTGA CCCGGCGTTT CAGCTACGAC
GTCGGTGGCC ATCTCACACG ACTGGATGAG ATTGGCTATG GCGAAAATGC CGAGCGGCCC
GAGCGCCATA CGCTGTTCGA GCGTGATGCC ATTGGCCGTT TGGTCGCCAA GATCAACCGT
GATGCGAGCC AGACATTCGC ATACGACGAC GGTGACCGGT TGCTGAGCAT CGCGCGGCAA
CCGACCGGCA TCGGCAAGCA GCTTGGGATC ACAGAAGAAA AGCTGGAATA CACCTACGAT
CTGCTCGGCC GGCTGACGAA AGAAATCACC CCTGACGGCA CGCTTGGCTA TGAGTACGAC
CCGCTTAGCA ACCTGACCAC GCTGACCCTG CCGGATGGGC GTAAGGTCAA TCACCTGTAC
TACGGCAGCG GCCACCTGCA CCAGCTGAAC CTGGACGGGT TGGTGATCAG CGACATGGAG
CGTGACGACC TGCACCGCGA GGTGTACCGC ACGCAGGGCA AGCTCACCAG CTGCTTCGGT
TATGACGCCA TGGGGCGCAA GGCCTGGCAG TTTGCCTCGA CCTTGCCGGC CGACAAGCTT
TCGCAGGTGC ACAACACCGG CATCAATACC TCGTTGCTGG TCGAGCACGC CTACAACCCG
ATCCACCGCC GTTACCAGTA CGACCCGGCC GGTGAACTGG TGCGTACCCT CGACAAGCTA
CGCGGCGAGA TCAAGTACGA ATACGAAGCC AACGGCCAGT TGCGCAGTCG TGATACCGGC
TCGTTGATCG GCAGCGAGGA ATTCCGCTAC GACCCGGCAG CCAACCGCCT GGACTTCAAT
GCGCGGCAGT TCGACAAGGT CAAGGACAAT CGGATCAAAC AGTGGCGCGA TCAGGAGTAC
CGCTACGATC CGTGGGGCAA CCTGATCGAG AAGCGCTCTG GGCACAGCAA GCTGCAGAGC
TTTAGCTATG ACTGCGAGAA CCGGCTGGTG CGGGCGGAGA CGTTGGTCAA TGGCAAACTG
GAAAGCCGAG GCGAGTATCG TTACGACAGC TTGGGGAGGC GAATAGCCAA GCAGGCTGAA
ATCAATGGTG AGGTCGAGCA GAAGCGCTTC CTCTGGCAAG GGCTAAGGAT GCTGCGGGAG
GAATCGCCTG CGAAGAGCAT CTTGTACCTG TACGAGCCGG GTAGCTATGC GCCGTTGGCG
CGGGTTGATC AGGTTGAAGG GGAAGGGCAG AAGGTCTATT ACTTCCATAC TGACCAGATT
GGAACCCCGC TGGAGCTGAC CGATAGCGAG GGTGAGATTG TCTGGCAGGC GACATATCGC
TCGTGGGGTG AGATAGAGCA GCTAGCGGTC AATGAGGTGG AGCAGAACCT ACGCTTCCAA
GGTCAGTACT TTGATGCCGA AACGGGGCTG CACTACAACA CGTTCCGATT CTATGTCCCT
GAAATCGGGA GATTTCTGAC ACAAGACCCC ATCGGTCTAG CAGGTGGAGA TAATTTATAT
CAATATGCAC CTAGCCCTAT AGGGTGGATC GATGAACTAG GTCTGTCGTG CAACTCAGAT
GCCAAGCTTC TTCGAAAAGA ACTCGGGATA AGTCCACAGG GGGGAGGTCA GTATGATGCG
CATCATATTG TGATGTCCAA CTCGAAAGAT GCGAGGATGA TTGCACTCCG GAAAAAGATG
GATGAATTGG ACATTGATAT AAATGATAAG CGTAATGGGA TTTGGCTGCC CAATACCGAG
TCTGCAAGGG TTCCAGGTAC AACTGCCACC CCTCACAAAG GTGCGGGTGT GCACGGCAAA
GCCTATAAGC AATATGTCTT TGATAAGCTT TCCGTAGCCA ATGGTCGAGA GGAATTTCTC
AGCGCACTTT CCGAGGTTAA GCAGTCGCTG TTTGATGGTA TTTCATTTAA AACGATAAGG
TAG
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| Protein sequence | MFEAARFGDE ISHTSALGGF LIGAALGIAL VATVAIATFT CGFGVALLAG LAAGIGGSLL
TAAGEAIGSM FSSPSGTITT ASPNVFINSR KAARVEKSIG ACDKHPGPVQ IAEGSTNVFI
NSVAAARKGD KLTCGATISG GSDNVIIGGG TYRYLPVDDE VPEWLRTTVD VLMAIAGAAG
GIAQLIKAGT QAGMKAVMPC ALKFTAGFVA GEVASRYVVE PVARKAIGGL VGNPVDLTTG
RKLIPDEIDF SLPGLMPIEW SRFYASDLTV DSVLGRGWVL PWEQSLRRQG AFIYLTDNQG
REVPFVTLQP GQRIYNPHEQ VYLVCTEGGH YILQTLDNLF FYFGEVPDTN TEVPLQRIEN
VLGHFLHFTR TPDGTLTDIS ATGGTRVHLH YDNPLGRLTD IKRVVNNEAV ETLTQYRYDE
HGQLSAVINR NGDTVRSFSY ADGLMVTHSN ALGLGCHYRW QTLGDKPRVV EHWTSDGEHY
HFRYDLDSRT SWATDVLGRE LEVQYNADHR VVASRDYGGE RYAIELDENG NMVGLTLPDG
NRLQFKYDEF SRLLEETDPL GRRTTYEYHH LTTLVTQVSY PDGSTWRARY DDKGNLLAEF
DALGQMTEYL NSDDGLPHTI IDATYKSKYL WWNTLAQVER YQDCSGKSTY YRYDERQHLV
AVTNALNQTT TLERKPDGEV LRISHPDGTT ESFTYNVYGQ VLSHTDGKGQ TTRLMRTARG
LPSSRQDAKG QRVRYEYDKA IRLTALVNEN NATYSFAYDA SDRLSEEVRV DNLTRRFSYD
VGGHLTRLDE IGYGENAERP ERHTLFERDA IGRLVAKINR DASQTFAYDD GDRLLSIARQ
PTGIGKQLGI TEEKLEYTYD LLGRLTKEIT PDGTLGYEYD PLSNLTTLTL PDGRKVNHLY
YGSGHLHQLN LDGLVISDME RDDLHREVYR TQGKLTSCFG YDAMGRKAWQ FASTLPADKL
SQVHNTGINT SLLVEHAYNP IHRRYQYDPA GELVRTLDKL RGEIKYEYEA NGQLRSRDTG
SLIGSEEFRY DPAANRLDFN ARQFDKVKDN RIKQWRDQEY RYDPWGNLIE KRSGHSKLQS
FSYDCENRLV RAETLVNGKL ESRGEYRYDS LGRRIAKQAE INGEVEQKRF LWQGLRMLRE
ESPAKSILYL YEPGSYAPLA RVDQVEGEGQ KVYYFHTDQI GTPLELTDSE GEIVWQATYR
SWGEIEQLAV NEVEQNLRFQ GQYFDAETGL HYNTFRFYVP EIGRFLTQDP IGLAGGDNLY
QYAPSPIGWI DELGLSCNSD AKLLRKELGI SPQGGGQYDA HHIVMSNSKD ARMIALRKKM
DELDIDINDK RNGIWLPNTE SARVPGTTAT PHKGAGVHGK AYKQYVFDKL SVANGREEFL
SALSEVKQSL FDGISFKTIR
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