Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4170 |
Symbol | |
ID | 5199983 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 4587191 |
End bp | 4587853 |
Gene Length | 663 bp |
Protein Length | 220 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640583724 |
Product | TetR family transcriptional regulator |
Protein accession | YP_001264648 |
Protein GI | 148557066 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.0130344 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.052898 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATCTTC GAAAAATCGA AAACAGCATC CTGGACCACG CCTTGGCGAT GTTCAATGAA TTCGGCTGGT CCAGCGTGTC CACGAACCGA ATATCCACGG CGGCGGGAAT CAGCAAAGGA CATCTTCATT ATTATTTCCC GAACAAATCG GAGATCATCG TCGCACTATA TATGCGCATG GACAGCGAGA TGCGCCAATG GTGGCGTACC GATCGCGAGA ATTTCACGAT GGAGCATATG GCCAGGATGT TCATCCGGCA GGTCGTCGTC ATCGAGAAAT ACAAGTTCCT GTATCGGGAT ATCGGCAACA TCATCAGAGA CAATAAAATC CTGAAAGGCC GCTTCACCGA AGTCCGATCA CGACGCATGA AGGAAACCGA GGCGTTCGTA AGGGAACTGG TAAACGCCGG CCTGCTCGAG AATATCGATG TAGATCCCGT TCAGTTCGAT TATTTCATCA AGGCGACATG GGTCTTGTCC GACTATTGGA TGACGCATGT CGATGCCAGC GGGATTCCGA CCAGAGAGGA AGCCTATCTC GAAGGATATC ATGTGCTGAT CAACCAGTTC ATGCCCTACC TGACCGAGAG CGGAAAACGC GCGCTCGCCG AGGTAGACCT TCGACAAATC CTACAGGAGC AGCTCGAGAA TTTTCGAGCT TGA
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Protein sequence | MDLRKIENSI LDHALAMFNE FGWSSVSTNR ISTAAGISKG HLHYYFPNKS EIIVALYMRM DSEMRQWWRT DRENFTMEHM ARMFIRQVVV IEKYKFLYRD IGNIIRDNKI LKGRFTEVRS RRMKETEAFV RELVNAGLLE NIDVDPVQFD YFIKATWVLS DYWMTHVDAS GIPTREEAYL EGYHVLINQF MPYLTESGKR ALAEVDLRQI LQEQLENFRA
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