| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3767 |
|---|
| Symbol | |
|---|
| ID | 5197218 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 4134439 |
|---|
| End bp | 4136073 |
|---|
| Gene Length | 1635 bp |
|---|
| Protein Length | 544 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640583322 |
|---|
| Product | amidohydrolase 3 |
|---|
| Protein accession | YP_001264250 |
|---|
| Protein GI | 148556668 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1574] Predicted metal-dependent hydrolase with the TIM-barrel fold |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCG GTTCGATGGC CCTTCTGGCC GTGCTTCTGG CGAGCGGCGC GAAGCTGTCG
GCGGAGCCCG TCGCCGACAC CGTCTATCGC CACGGCCGTA TCTACACCGT CGATCGCGCG
CATCCCTGGG CGGACGCCGT CGCGATCAAG GACGGCAAAT TCTCCTATGT CGGCACCGAC
AAGGGCGTGC AGGCCTATAT CGGCGGCACC ACCAAGGTGA TCGACCTCGC CGGCAAATTC
GCGATGCCGG GCCTCCACGA CGCGCACCAG CACATGCTCA AGGGCGAGGC GCGCTACATC
TATTGCCAGA TCGCGCCGGA AAGCCGGATC GAACAGATCG TCGCCAGCCT GAAATCCTGC
TCGAAGGACC GGCAATATGG CGGCTGGATC GTCGCCGACG TCTATCGCGG CGACCTGTTC
CCCGATGGCC ATGCCGACCG CAAATATCTC GACGCGGCCT TTCCCGACAC GCCCGTCTAC
ATCCGCGAAT GGTCCTATCA TCACGGCCTC GCCAACACGA AGGCCCTCCA GATCGCGGGC
GTCGACCGCG CCACGGCCGA TCCCGAGGGC GGCCGGGTGC TGCACCGCGC CGACGGCGAG
CCGACCGGCG AGTTCCTCTC CAAGGCGACC TGGCTGATCA CCCAGCACAT CCCCGCATTG
CCCGCCGCGA CGGTCGACGA GGCGTTGCTG CGCACCGCCG CGCTCTGCGC CGAATATGGC
ATCACCTCCG CGCAGGAGGC GACCGCGTCG CGCCAGATGC TCGAGGAGAT GCGCAAGCTC
GACCTCGCCG GCAAATGGAC GCTGCGCACC GCCACCCACA TCGTCTGGGG CAACCCGGCG
AGCGCGCTGA TGCCGCCGCA GGAGACCGAG GAGGTGATCG CCCACCGCAA GGACTATGCG
ACGTCGCACA TCTTCACCGA TTTCGTGAAG ATCTACGTCG ACGGCAGCCC GTTGCAGCCC
CATTCGACCG ACGTCGAGCT CGACGATCAC GGCGAGGTCG CGGTCGCGCG CCTCTACGAG
AAGCCCGCCG TGCTCAACGC CGCGCTGACC CGGTTCGACA AGATGGGCAT CAAGGTGAAG
ATGCACGCCG TCGGATCGGG CGCGATCCGC ACCGCGCTCG ACGCGATCGA GGCCGCCCGC
ACCGCCAACG GCAATTCGGG CATCCTCCAC GACGTCGCGC ACAGCCTGCG CTATTCGCCG
CAGGACATCG ATCGCCCGGC CAGGCTCGGC GCGGTCGGCG AGATGTCGCC GGCGATCTGG
CAGATCAAGG GGCCGCTGAC CAAGAACCTG GCCGGGGCCT GGCCGTTCAA GTCGCTGCTC
GCGCGCGGCA CGCTGATGAC GCTGGGCAGC GACTGGGTCG TGCTGCCGGC GCCGAACCTG
TTCCCGGCGA TCGGCGGCAT GCTCGATCAC GGCCCGGAAT CGATCGGCCT CAAGGACGCG
ATCGAGATCG CGACGATCAA CGGCGCCAAG TCGGTCGGCT GGGACAAGGT CAACGGATCG
ATCGAGGTGG GCAAGTTCGC CAACATGATC GTGCTCGACC GCGACCTGTT CAAGATCCCC
GCCGCCGACA TCGGCGAGAC CAAGGTCCTG TCGACCGTCT TCGAGGGACG CGAGGTCTAC
GCCCGGCCGC AATGA
|
|---|
| Protein sequence | MKIGSMALLA VLLASGAKLS AEPVADTVYR HGRIYTVDRA HPWADAVAIK DGKFSYVGTD
KGVQAYIGGT TKVIDLAGKF AMPGLHDAHQ HMLKGEARYI YCQIAPESRI EQIVASLKSC
SKDRQYGGWI VADVYRGDLF PDGHADRKYL DAAFPDTPVY IREWSYHHGL ANTKALQIAG
VDRATADPEG GRVLHRADGE PTGEFLSKAT WLITQHIPAL PAATVDEALL RTAALCAEYG
ITSAQEATAS RQMLEEMRKL DLAGKWTLRT ATHIVWGNPA SALMPPQETE EVIAHRKDYA
TSHIFTDFVK IYVDGSPLQP HSTDVELDDH GEVAVARLYE KPAVLNAALT RFDKMGIKVK
MHAVGSGAIR TALDAIEAAR TANGNSGILH DVAHSLRYSP QDIDRPARLG AVGEMSPAIW
QIKGPLTKNL AGAWPFKSLL ARGTLMTLGS DWVVLPAPNL FPAIGGMLDH GPESIGLKDA
IEIATINGAK SVGWDKVNGS IEVGKFANMI VLDRDLFKIP AADIGETKVL STVFEGREVY
ARPQ
|
|---|
| |