Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_1435 |
Symbol | |
ID | 5197407 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 1578286 |
End bp | 1578894 |
Gene Length | 609 bp |
Protein Length | 202 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640580982 |
Product | SNARE associated Golgi protein |
Protein accession | YP_001261937 |
Protein GI | 148554355 |
COG category | [S] Function unknown |
COG ID | [COG0398] Uncharacterized conserved protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.000156702 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.000261969 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | GTGACGATAT TCGCGATACC GGTTGTGATT TTCGGCGACC GAATCGAAGA TTATCTGAAT TTCGAGAGGA TCATTTTTCT GCTCAAGGAG CATGGGTCCC TGGCTGCGGT AGCGGGAATT GCCGCGATTT CGGCCGATCT GTTCATCCCG ACGCCGGCAC ATGCGATCAT GACGGGGTTC GGGCTGGTGC ATGGCTGGTT CGTCGGCGGC GTCCTGGCGA GTGCCGGGAC CTTTCTGGCC GGAACCATCG CCTATTGGCT GTCGCGCGTC ATGGGGCAGC GGGCGGCACG GTTCATCGCG GGCGAAGAGG ATATGGAGAA GCTTCACGCC CTGTTCGAGC GATATGGCTT CGGCGCGATC ATCATCTCGC GCTGGATCCC GATCGTACCG GAAGTGCTGT CCTGCCTGGC CGGCATGACC CGCATGCCGC ACGCGCGCTT CGCGCTGGGC AATCTGATCG GGAGCCTCAG CGTGGGTTTC TTCTACGCGG GCTTGGGAGA CGCTTATGGC GGGACGCCGC AATTCGCGCT GACCCTGTCG GTCGTCCTGC CGTTCCTCCT GTTGCCGCTG TTCCTTCTCA TCGCCGCCCG TTCGCGCCGG GCGGCATAG
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Protein sequence | MTIFAIPVVI FGDRIEDYLN FERIIFLLKE HGSLAAVAGI AAISADLFIP TPAHAIMTGF GLVHGWFVGG VLASAGTFLA GTIAYWLSRV MGQRAARFIA GEEDMEKLHA LFERYGFGAI IISRWIPIVP EVLSCLAGMT RMPHARFALG NLIGSLSVGF FYAGLGDAYG GTPQFALTLS VVLPFLLLPL FLLIAARSRR AA
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