| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1116 |
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| Symbol | |
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| ID | 5198713 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 1257095 |
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| End bp | 1260445 |
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| Gene Length | 3351 bp |
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| Protein Length | 1116 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640580663 |
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| Product | TonB-dependent receptor, plug |
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| Protein accession | YP_001261620 |
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| Protein GI | 148554038 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.880967 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.249969 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGAACT TCAATCTCGG CTGCGCCGCG GGCGCAATCG CTGTCGCCAT CGTCGCGAGC
GCTCCGGCCC TCGCCCAGGA AACCACTTCG TCGATCCAGG GCAACGTCAC CGCGAACGGC
GCGCCCGTCG CCGGTGCGAC CGTCACCATC ACCCATGTGC CGTCGGGCAC CCGGTCGACG
CTGACCACCG ACGGCTCGGG CAGCTTCAAC GCCAACGGCC TGCGCATCGG CGGCCCCTTC
ACCGTCGTCG TCAACGCGCC GGGCTATCCG ACCTCGCAGG TCACCGACAT CCACACCGTG
ATCGGCCAGC CCTATTCGCT GCCGATCGAG CTCGCCGAAC AGGGCGGGCA GGAGATCATC
GTCACCGCGA GCAGCATCAA GAACGCCCGC ACCGTCTCGC AGGGGCCGGC GACGGTCCTC
ACCACCAGCG ACATCGCGCA GGTCGCCACG ATCAACCGCG ACATCCGCGA CCTGATGCGC
CGCGACCCGT TCGCCCGGCT CGACGACACC CCCTCGGGCG GCCGCGCGGT CTCCTTCGCG
GGCCAGAACG CCCGCTTCAA CCGCTTCACC GTCGACGGCG TGCCGATCAC CGACAATTTC
GGCCTCAACC CGGACGGCCT CCCCAGCCGC CGCTCGCCGA TCCCGCTCGA CGCGGTCGGC
CAGTTCCAGA CCAAGGTCGC GCCCTATGAC GTCCGCGAGG GCAATTTCCA GGGCGGCGTG
ATCAACATCG TGCTCCGGTC AGGCACCAAC GACTTCCAGG GCACCGGCTT CTACGCCTAT
TCGTCGGACG AGCTGAGCGG CAAGAAGACC AAGAAGGGCC CCGGCGTCCC GACCGGCAAG
GTCACCCTGC CGAACTTCAC CTACAAGAAT TACGGCGCCG AGCTGTCGGG CCCGATCATC
AAGGACAAGC TGTTCTTCAT GGTCGCCGGC GAGAGCATCC GCGCGCCGCG TCCGATCTCG
GAGGGGCCCG GCGACAACAA TGCCGGCACC GCGATCCCCA ACCTGACCCA GGCGATGGTC
GACAACGTCG TCGACATCGC CAAGAGCCGC TACAATTACG ACGCGGGCGA GGTGCTCAAC
ACCAACGGCG ACAAGGACGA CCGCCTGGTC GCCAAGCTCG ACGCCAACCT GTCGGAAACG
CAGCGCCTCT CGCTGACCTA CGCCTATGCG AAGGATCAGA TCTACCTGAC GAACAACGTC
AACACCGGCA CCTCGGCCCC CGGCCTCGGC CTCTCGTCGA ACGCCTATGT CCAGGGCAAC
AAGCTGCACA CCGGCGTGCT CCAGCTCAAC TCCGACTGGT CGGACGACTT CTCGACCGAG
GCGCGCGGCT TCTACAAGAA ATATGTCCGC CTGCAGGACC CGCTGATGGG CCGCGGCTTC
GCCCAGTTCC GGGTCTGCAC CGCGCCGACC TCCGACCGCG GCTCGGGCAC GCCGACCAGC
AACACCGAGG CGACGAGTTG CCCGTCGGGC GTGCCGATCG TGTCGATCGG CCCGGACAAT
TCGCGCCAGA CCAACGCGCT CAACACCGAG ACCTTCGGCG GCTCGTTCCA GGCGCGCCTG
ACCCGGGGCG ACCATGACAT CCGCGCCTTC ACCGAATATT CGCATGTGAA GGTGTTCAAC
GCCTTCCTGC AGAACACGGC CGGCAACTAT TATTTCGACT CGATCGCCGA CTTCCAGGCC
GGCAACGCGC AGAGCCTGCA ATATCAGAAC GCGATCCCGT CGCTCGATCC CGACGACGCG
GCCGCCAAGT TCAGCTACCA GACCTACACC TTCGGCCTCC AGGACACCTG GCGTCCCGAT
CCGACCTTCA CCCTGTCCTA CGGCCTGCGC TACGACCTGT ACGGCGGCGA GAGCCGGCCG
GCGTTCAACC CGAACTTCCT AAACCGCTAC GGCTTCAACA ACATCTCCTA CCTCAACGGC
CGCGGCCTGC TGCAGCCGCG CCTCGGCTTC GACTGGAAGC CCACCTCGCG CCTCGCGGTG
CGCGGCGGCG GCGGCATCTT CGGCGGCGGC GCGCCCGACG TCTATGTGTC GAACAGCTTC
TCGAACACCG GCATCCTGAC CAACACCCAG ACGATCCGGA TGAACAACGA CGGCAGCTTC
AACGTGCCGG GGCTGACCGG CGCCGGGGCG GCCACGGTCG GCGGCGCGGC GCTGGTCGGC
GTCGACGGCA CCGTGATCCG CGACGCGGTG AACCAGTATA TCGCCAACGG CTCGATCATC
GCGGCCTCGA CCACCAACGC GCTGGATCCG AACTTCAAGA TCCCGTCGCA GTGGCGCGCC
ACCATGTCGT TCGACTATCG CGCGAACCTC GGCTTCCTCG GCGACGACTG GCAGTTCGGC
CTCGACCTGC TCTACTCGAA GGTCCGCAAC CAGGTGTTCT TCACCGACAT CCGCTCGGTG
CCGATCGCCG GATCGCTGAC CCCCGACGGC CGCCAGCGCT ATACCGGCCT GCTCGGCTTC
AACGACAGCA ATGCCGATTA TTTCCTGACC AACACCAAGA AGGGCCGCAG CTACATCGCC
GTCGCCCGCC TGGACAAGGC GTGGGATTTC GGCCTGTCGG CCGGCATCCG CTTCACCTAT
CAGGACATCA AGGACCAGGC GCCGGCGACC TCGTCGACCG CGTCGTCCAA CTATGGCAAC
GGCGCCTTCC TGGACGCCAA CGGCGCCGCC TACGGCATCT CGAACGACCA GGTGAAGTAC
AATATCAAGT ACAACCTGTC GTTCGAGCGT GAGTTCTTCG GCGACAACAA GACGACGATC
TCGCTGTTCG GCGAGACCCG CATCGGCCGT CCGTACAGCT ACACCATGTT CGACCCGTCG
TCAGGCCGCA GCCCGGTGTT CGGCACGGTC GGCAGCGGTT CGCGCTACCT GCTCTACGTG
CCGAAGATCG GCGGCGATCC GCTGGTCTCC TACGACTCGG ATGCCACCCA GGCGGCGTTC
GAGAACTTCG TCCGGACCTC GGGCCTGGAG AAATATCAGG GCAAGATCGC GCCGCGCAAC
AAGTTCAACT CCAAGTGGTT CACCCGCTTC GACCTGCACC TGTCGCAGGA GGTGCCGACG
GGCCTGGGCG ACTCGAAGGT GACCTTCTTC GCGGACATCG AGAACTTCAC CAACCTGATC
AACAAGAAGT GGGGCCAGAT CCGCGAATAC GCCTTCCCCT ACACCTCCGC GCCGATCCGC
GTCGCCTGCC TCACCACGGC CGGCAACGCC AACGGCAAGG GGACCAAGGC GACCAACTCG
TCGCAGACCT GCGCCCAGTA TCAATATTCG CAGTTCACTC AGCCGACCGA CACGATCTAT
TCGAGCCAGT CGCTCTATGC GATCCGCGTC GGCGTGCGCT TCTCCTTCTG A
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| Protein sequence | MRNFNLGCAA GAIAVAIVAS APALAQETTS SIQGNVTANG APVAGATVTI THVPSGTRST
LTTDGSGSFN ANGLRIGGPF TVVVNAPGYP TSQVTDIHTV IGQPYSLPIE LAEQGGQEII
VTASSIKNAR TVSQGPATVL TTSDIAQVAT INRDIRDLMR RDPFARLDDT PSGGRAVSFA
GQNARFNRFT VDGVPITDNF GLNPDGLPSR RSPIPLDAVG QFQTKVAPYD VREGNFQGGV
INIVLRSGTN DFQGTGFYAY SSDELSGKKT KKGPGVPTGK VTLPNFTYKN YGAELSGPII
KDKLFFMVAG ESIRAPRPIS EGPGDNNAGT AIPNLTQAMV DNVVDIAKSR YNYDAGEVLN
TNGDKDDRLV AKLDANLSET QRLSLTYAYA KDQIYLTNNV NTGTSAPGLG LSSNAYVQGN
KLHTGVLQLN SDWSDDFSTE ARGFYKKYVR LQDPLMGRGF AQFRVCTAPT SDRGSGTPTS
NTEATSCPSG VPIVSIGPDN SRQTNALNTE TFGGSFQARL TRGDHDIRAF TEYSHVKVFN
AFLQNTAGNY YFDSIADFQA GNAQSLQYQN AIPSLDPDDA AAKFSYQTYT FGLQDTWRPD
PTFTLSYGLR YDLYGGESRP AFNPNFLNRY GFNNISYLNG RGLLQPRLGF DWKPTSRLAV
RGGGGIFGGG APDVYVSNSF SNTGILTNTQ TIRMNNDGSF NVPGLTGAGA ATVGGAALVG
VDGTVIRDAV NQYIANGSII AASTTNALDP NFKIPSQWRA TMSFDYRANL GFLGDDWQFG
LDLLYSKVRN QVFFTDIRSV PIAGSLTPDG RQRYTGLLGF NDSNADYFLT NTKKGRSYIA
VARLDKAWDF GLSAGIRFTY QDIKDQAPAT SSTASSNYGN GAFLDANGAA YGISNDQVKY
NIKYNLSFER EFFGDNKTTI SLFGETRIGR PYSYTMFDPS SGRSPVFGTV GSGSRYLLYV
PKIGGDPLVS YDSDATQAAF ENFVRTSGLE KYQGKIAPRN KFNSKWFTRF DLHLSQEVPT
GLGDSKVTFF ADIENFTNLI NKKWGQIREY AFPYTSAPIR VACLTTAGNA NGKGTKATNS
SQTCAQYQYS QFTQPTDTIY SSQSLYAIRV GVRFSF
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