Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_0245 |
Symbol | |
ID | 5197539 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 250766 |
End bp | 251767 |
Gene Length | 1002 bp |
Protein Length | 333 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640579785 |
Product | nifR3 family TIM-barrel protein |
Protein accession | YP_001260754 |
Protein GI | 148553172 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0042] tRNA-dihydrouridine synthase |
TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.17015 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCCCA GACTGCGCCC CATCGACATC GGTCCCGTGC GGATCGACAG CCCCGTGATT CTCGCGCCGA TGACCGGCGT GAGCGACCTG CCGTTCCGCA AGGTGGTGCG CGGCTACGGG TCGGGGCTGA ACGTCACCGA GATGATCGCC AGCCAGGCCG CGATCCGCGA GACGCGCCAG TCGGTGCAGA AGGCGCTGTG GGACCCGGCC GAGGAGCCGG TGTCGATGCA GCTCGTCGGC TGCACGCCGA AGGAGATGGG CGAGGCGGCG AAGCTCAGCC AGGATCGCGG CGCCGCGATC ATCGACATCA ACATGGGTTG CCCGGTGCGC AAGGTCGTCA ACGGCGACGC CGGATCGGCG CTGATGCGGA CGCCCGAGCT GGCGGTCGAG ATCGTCAAGG CGACGGTCGC GGCGGTCGAG GTGCCGGTCA CGCTCAAGAT GCGGATGGGC TGGGACCATG ACAGCCTCAA CGCGCCCGAA CTGGCGCGCA TCGCCGAGGA TGTCGGCGTG AAGATGATCA CCGTCCACGG CCGCACCCGC TGCCAGATGT ACAAGGGATC GGCCGACTGG GCGTTCATCC GCCGGGTCAA GGAAGCGGTG TCGATCCCGG TGATCGTCAA CGGCGACATC TGCTCGATCG AGGATGCCGA GACTGCGCTC GACCAGTCGG GCGCCGATGG GCTGATGATC GGGCGCGGCG CCTATGGCCG GCCCTGGCTG CTGTCGCAGG TGATGCATTA TCTCGCCACC GGCGAGCGCA GGCCCGATCC GACGATCGAG CAGCAATATC ACGTCATATT AGCGCATTAT CATGCGATGC TCGAACTCTA TGGGAAAGAG GTCGGCGTCA ACATGGCGCG CAAGCACATC GGCTGGTACA CCAAGGGGCT GGCCGGCTCG GCGGAGTTCC GCAACGCCGT CAACCAGGAG CCCGACGCCG CCAGGGTGAT CGCCATGCTC GGAGAATTCT ACGCGCCATG GCTCTCCCGG GCAGCAGCCT GA
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Protein sequence | MTPRLRPIDI GPVRIDSPVI LAPMTGVSDL PFRKVVRGYG SGLNVTEMIA SQAAIRETRQ SVQKALWDPA EEPVSMQLVG CTPKEMGEAA KLSQDRGAAI IDINMGCPVR KVVNGDAGSA LMRTPELAVE IVKATVAAVE VPVTLKMRMG WDHDSLNAPE LARIAEDVGV KMITVHGRTR CQMYKGSADW AFIRRVKEAV SIPVIVNGDI CSIEDAETAL DQSGADGLMI GRGAYGRPWL LSQVMHYLAT GERRPDPTIE QQYHVILAHY HAMLELYGKE VGVNMARKHI GWYTKGLAGS AEFRNAVNQE PDAARVIAML GEFYAPWLSR AAA
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