| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5399 |
|---|
| Symbol | |
|---|
| ID | 5195808 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009507 |
|---|
| Strand | + |
|---|
| Start bp | 308586 |
|---|
| End bp | 309146 |
|---|
| Gene Length | 561 bp |
|---|
| Protein Length | 186 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640579326 |
|---|
| Product | resolvase domain-containing protein |
|---|
| Protein accession | YP_001260274 |
|---|
| Protein GI | 148550835 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1961] Site-specific recombinases, DNA invertase Pin homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.00909416 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCTCG GCTACGCGCG CGTTTCCACC GAGGATCAGA ACTTGGAAAT CCAGCGCGGT
CGGCTCTCGG AGGCGGGCTG TGAAATGATG TTCGAAGAGA AAATATCGGG GGCCGCTCGT
GGCCGGCCCG AGCTTGAAAA GCTGATGGGT CACCTGCGCA AAGACGATGT TCTCGTCGTC
GCCCGCCTCG ATCGTTTGGC GCGATCCACC ATCGAACTCC TGCACATCGC GGAACGCATC
AAGGAAAAGC AGGCAGGATT ACAATCGCTT GATGAACCTT GGGCCGATAC CACGTCCCCG
TCTGGCGTGA TGATCATGAC CGTATTCGCT GGGATCGCCC AGTTCGAGCG GACTCTCATA
TTGAGCCGAA CCGAGGAGGG GCGAAAGGCG GCGATGGCGC GCGGTGTGAG CTTCGGACGC
CCAAAGAAAA TGCGCCCAGA TCAGGCGGAG CTCGCTCGCC AACTCGTTCT CGAGGGTAAG
TCCATTAGCG CCGTCGCAAG GACCTTCAAC GTTCACCCGG CCACCATCTA TCGCTGTATC
GAGCCAAACA GTGCCTTATG A
|
|---|
| Protein sequence | MKLGYARVST EDQNLEIQRG RLSEAGCEMM FEEKISGAAR GRPELEKLMG HLRKDDVLVV
ARLDRLARST IELLHIAERI KEKQAGLQSL DEPWADTTSP SGVMIMTVFA GIAQFERTLI
LSRTEEGRKA AMARGVSFGR PKKMRPDQAE LARQLVLEGK SISAVARTFN VHPATIYRCI
EPNSAL
|
|---|
| |