Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tpet_1218 |
Symbol | |
ID | 5171113 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermotoga petrophila RKU-1 |
Kingdom | Bacteria |
Replicon accession | NC_009486 |
Strand | - |
Start bp | 1238922 |
End bp | 1239659 |
Gene Length | 738 bp |
Protein Length | 245 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640563742 |
Product | tRNA pseudouridine synthase ACD |
Protein accession | YP_001244808 |
Protein GI | 148270348 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0101] Pseudouridylate synthase |
TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.000567145 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGCGCG TGGCGGCAGT GATCGAGTAC GATGGAAGCA ATTTCTTCGG ATACCAGGGT CAACCCGATG TCAGAACGGT TCAGGGAGTC ATAGAAGATG CCCTTGAAAG GATATTCAAA CAGAGAATCT ACATCCAGGC GGCGGGAAGA ACGGACACCG GTGTTCATGC GAACGGTCAG CTCATCGCTT TCAACTGTCC GAACGATCGA ATGACCACCG AGGACATAAG AAACGCCATG AACGCGAATC TTCCGGATGA TGTTTATGTG AAAGAGGTTT TCGAAGTTCC TGTGAATTTT CATCCCCGTT TCGATGTGAC AAAGAGAATC TATCACTACT TCATTCTGAC TTCGAGGCAG AAGAACGTTT TCCTCAGAAA ATACGTCTGG TGGTTTCCCT ACGAGCTCGA TCTCGATGCG ATGCGAAAAG CGGTGAAGTA TCTGGAGGGT ACCCATGACT TCACCTCTTT CAAGACGGGG AGTGATGAAA GAGATCCTGT GCGGACCATA TACAGAATCA GAATTTTGAG GTTAAAAAAC GATCTTGTTC TCATAAGAGT GGAGGGAAGG TCCTTTCTGA GAAGAATGGT TCGAAACATC GTTGCCGCTC TTGTGAAAGT TGGTTTGAAG CAGTGGGAAC CTGAGAAGAT GAAGGAGGTG CTCGAAGCAC GCGACAGGAG CGCGGCGGCT GGTACCGCAC CTGCACATGG CTTGTACTTT TACAAAGTGC TGTTTTGA
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Protein sequence | MKRVAAVIEY DGSNFFGYQG QPDVRTVQGV IEDALERIFK QRIYIQAAGR TDTGVHANGQ LIAFNCPNDR MTTEDIRNAM NANLPDDVYV KEVFEVPVNF HPRFDVTKRI YHYFILTSRQ KNVFLRKYVW WFPYELDLDA MRKAVKYLEG THDFTSFKTG SDERDPVRTI YRIRILRLKN DLVLIRVEGR SFLRRMVRNI VAALVKVGLK QWEPEKMKEV LEARDRSAAA GTAPAHGLYF YKVLF
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