Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_0103 |
Symbol | rpsA |
ID | 5149597 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | - |
Start bp | 108117 |
End bp | 109826 |
Gene Length | 1710 bp |
Protein Length | 569 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640555130 |
Product | 30S ribosomal protein S1 |
Protein accession | YP_001236309 |
Protein GI | 148251724 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0539] Ribosomal protein S1 |
TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.503388 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.928701 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTTCGA GTATCTCTGC TAATTCCTAC AATCCCAGTC GCGATGATTT TGCCGCGATG CTGGATGAGT CCTTCACGAA GGGCAACCTT CAGGAAAGCT CCGTCGTCAA GGGCAAGGTC GTTGCGATCG AGAAGGACAT GGCCGTCATC GACGTCGGCC TGAAGACCGA AGGCCGCGTG GCGCTGCGTG AATTTTCCGG TCCCGGCCGC GACAGCGAGC TGAAGGTCGG CGACGAGGTC GAAGTGTTCC TCGACCGCAT CGAGAACGCG CTCGGCGAAG CCGTGCTGTC GCGCGACAAG GCCCGCCGCG AAGAGAGCTG GGGCAAGCTC GAGAAGGCGT TCCAGAACAA CGAGAAGGTC AACGGGGTCA TCTTCAACCA GGTCAAGGGC GGCTTCACCG TCGACCTGGA CGGCGCCGTG GCGTTCCTGC CGCGCTCGCA GGTCGACATC CGTCCGATCC GCGACGTCGC GCCGCTGATG AACAATTCGC AGCCGTTCCA GATCCTCAAG ATGGACCGTC GCCGCGGCAA CATCGTCGTG TCGCGCCGGA CCGTGCTGGA AGAGACCCGC GCCGAGCAGC GCCAGGAGCT GGTGCAGAAC CTCGAAGAGG GTCAGGTGAT CGACGGCGTC GTCAAGAACA TCACCGATTA CGGTGCGTTC GTCGACCTCG GCGGCATCGA TGGCCTGCTG CACGTCACCG ACATTGCCTG GCGCCGTGTC AACCACCCGA CCGAGGTGCT TTCGATCGGT CAGACCGTCA AGGTCAAGAT CATCAAGATC AACCACGAGA CGCACCGCAT CTCGCTGGGC ATGAAGCAGC TGCTGGACGA TCCGTGGCAG GGCATCGAGG CGAAGTACCC GCTGCAGGCC CGCTTCCACG GCCGTGTCAC CAACATCACC GACTACGGCG CGTTCGTCGA GCTCGAGCCG GGCATCGAAG GCCTGATCCA CGTTTCCGAG ATGTCGTGGA CCAAGAAGAA CATGCACCCC GGCAAGATCG TGTCGACCTC GCAGGAGGTC GAAGTGCAGG TGCTCGAGGT CGATAGCGTC AAGCGCCGCA TCTCGCTCGG CCTCAAGCAG ACCATGCGCA ATCCGTGGGA GGTCTTCGTC GAGAAGCACC CGACGGGTTC GGTGGTCGAG GGCGAGGTCA AGAACAAGAC CGAGTTCGGC CTGTTCCTGG GTCTCGAAGG CGACGTCGAC GGCATGGTCC ATCTGTCGGA TCTCGACTGG AAGCTGCCGG GCGAGCAGGT CATCGACAAC TACAAGAAGG GCGACATGGT CAAGGCCGTG GTGCTCGACG TCGATGTGGA GAAGGAGCGC ATCTCGCTCG GCATCAAGCA GCTCGAAGGC GATCCCTTCG CCGAGCCGGG CGATGTCAAG AAGGGTGCAG TCGTCACCTG CGAAGTGCTC GACGTCAAGG ACGGCGGCAT CGACGTCAAG ATCGTCGGCA CCGAGTTCTC GACCTTCATC AAACGCTCCG AGCTGGCGCG CGATCGCAAT GACCAGCGCT CCGAGCGGTT CGCCGTCGGT GAGAAGGTCG ATGCCCGCGT GATCCAGTTC GACAAGAAGG CCCGCAAGGT CCAGGTGTCG ATCAAGGCGC TGGAAGTCGC GGAAGAGAAG GAAGCCATCG CGCAGTACGG CTCGTCCGAT TCGGGCGCCA CGCTGGGCGA CATCCTGGGC ACCGCGCTCA AGAACCGCGA CGCGAAGTAA
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Protein sequence | MASSISANSY NPSRDDFAAM LDESFTKGNL QESSVVKGKV VAIEKDMAVI DVGLKTEGRV ALREFSGPGR DSELKVGDEV EVFLDRIENA LGEAVLSRDK ARREESWGKL EKAFQNNEKV NGVIFNQVKG GFTVDLDGAV AFLPRSQVDI RPIRDVAPLM NNSQPFQILK MDRRRGNIVV SRRTVLEETR AEQRQELVQN LEEGQVIDGV VKNITDYGAF VDLGGIDGLL HVTDIAWRRV NHPTEVLSIG QTVKVKIIKI NHETHRISLG MKQLLDDPWQ GIEAKYPLQA RFHGRVTNIT DYGAFVELEP GIEGLIHVSE MSWTKKNMHP GKIVSTSQEV EVQVLEVDSV KRRISLGLKQ TMRNPWEVFV EKHPTGSVVE GEVKNKTEFG LFLGLEGDVD GMVHLSDLDW KLPGEQVIDN YKKGDMVKAV VLDVDVEKER ISLGIKQLEG DPFAEPGDVK KGAVVTCEVL DVKDGGIDVK IVGTEFSTFI KRSELARDRN DQRSERFAVG EKVDARVIQF DKKARKVQVS IKALEVAEEK EAIAQYGSSD SGATLGDILG TALKNRDAK
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