Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A0983 |
Symbol | |
ID | 5137295 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 1018221 |
End bp | 1019552 |
Gene Length | 1332 bp |
Protein Length | 443 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640532441 |
Product | GGDEF family protein |
Protein accession | YP_001216929 |
Protein GI | 147675423 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 46 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGATCAACT CATTAAACCG CAAAATGACG TTACTGTTTA TTGCATCACT GCTGTTAGTT GGTTTTATTG CTTTCTCATT ACTGAACTTA GATCAGCGGC AGCAGCAAAC CAATGCTGAG CTGGATACGA TTTTGGAAAT CCAAAACAGC ATTGCCATGT TGCGTAGCCA GCTCTGGGTC TTTCTGCAAT ACAACGATGC TCATAGCTTA GAGCAGGTTT ATCGTGCGCA GCAGGTTTTG GCTGGGCAGC TCGAGATGGA AACGGTCTTT GGGCAACACT TAGCCGGCAT CCAAAGAATG AATAACAGTT TAGCCGGGCT ATTAGAACAA GAGCGCTACA TGGCCGAAGA ATCGGGCATT ACTAAGTTGG TCGATGGCAT CGGAACTTAT GAGCTACTTC ACTCTCGATA CAATATTTTG GTGCAAAACA TGAATGAGGA GTTGGCCTAT TTTCAGCGTC AAGTCATGGA AGAGAGCATT AATAATCAAC GCTATTTATT GTTAACCACC ATGGCGCACT TACTGCTCTT CTCATCGGTT GTCTGTGGTA TCGCGCTGGT GGTGTTACGC CGCTTCCGAC ATGGATGTAA AACTCTCCAA GAAGGGATTG AACAAATGGC GAAAGGGGAT CTCGCCAGCC GAATTTCCAC TCAAAATAAT GAACAAGAGT TTGTTCAATT AACTCAGTTT TTCAATCAAA TGAAGGCTTC GCTGCAAAGC ACAACCGTTA CCAAAGATGA GTTACAAGCG GAAGTGGCAA GAAAAACCGC CAAATTAGAG CGTCAAAAAG CGGAATTACG TTTCTTGTCA GAAAGAGATT CATTGACAGG TATTTTGAAC CGCCGTGCCT TTAAACAGCA GCTTAGTCAC GCGTTAATTA AAGCGAAGCG CTCAAACATG AAGCTGGCTT TGCTGTTTTT TGACTTAGAT AAATTTAAAG AAATCAATGA CACCAAAGGG CACGAAGTAG GTGATCTTGT CTTGCAAGAA ATCGCTCAAC GGCTCAAAGG GTCGATACGA GAATCGGATT TTTGTGGGCG CTTAGGGGGG GATGAATTTG TGGTATGCCT AGATCTGCTG CAGGATCACA GTGGCGTTAT CAATAAGGCT TATCAGATGC TAGAAAAACT ACAAAAGCCG CTTCAACTTA ACCAAGAGAG CTTAGAGATT GGGGTGAGTA TTGGTGTCGC CTTATATCCA GAGCAAGCGA CCCAAGTACC TGAATTATTG CGTATTGCTG ATGAGGCGAT GTACACCGCA AAACATCAAT CCGGCAATAC GGTGTATTGC GCCCACCAAG ATAAGCACGA TCACACCAGT TTAGTGAGCT GA
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Protein sequence | MINSLNRKMT LLFIASLLLV GFIAFSLLNL DQRQQQTNAE LDTILEIQNS IAMLRSQLWV FLQYNDAHSL EQVYRAQQVL AGQLEMETVF GQHLAGIQRM NNSLAGLLEQ ERYMAEESGI TKLVDGIGTY ELLHSRYNIL VQNMNEELAY FQRQVMEESI NNQRYLLLTT MAHLLLFSSV VCGIALVVLR RFRHGCKTLQ EGIEQMAKGD LASRISTQNN EQEFVQLTQF FNQMKASLQS TTVTKDELQA EVARKTAKLE RQKAELRFLS ERDSLTGILN RRAFKQQLSH ALIKAKRSNM KLALLFFDLD KFKEINDTKG HEVGDLVLQE IAQRLKGSIR ESDFCGRLGG DEFVVCLDLL QDHSGVINKA YQMLEKLQKP LQLNQESLEI GVSIGVALYP EQATQVPELL RIADEAMYTA KHQSGNTVYC AHQDKHDHTS LVS
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