| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0309 |
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| Symbol | rumB |
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| ID | 5134449 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | + |
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| Start bp | 341914 |
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| End bp | 343041 |
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| Gene Length | 1128 bp |
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| Protein Length | 375 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640530632 |
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| Product | 23S rRNA methyluridine methyltransferase |
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| Protein accession | YP_001215150 |
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| Protein GI | 147671793 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR02085] 23S rRNA (uracil-5-)-methyltransferase RumB |
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Plasmid Coverage information |
| Num covering plasmid clones | 47 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGTGTG AGTTCTTTAT TCAAAAACGG TGTACCTCTT GCCACCAGTG TGCGCAGCCG
TATTCCCAAC AAGTTGAGAA TAAAGATCAG CAGTTGCGTG AGTTGATTGC GCCTGCCATG
GATGTGCAGT GGTTACCCCC TGTCACCAGT GCTGACACCG CGTTTCGCAA TAAAGCCAAA
ATGGTGGTGC TCGGTGCGGC TCACGCGCCG ATTTTAGGCA TTGAAGATGC GCAAGGTCAG
CCTTTGTCGC TGGTGACTTG CCCGCTTTAT CCGCAGCCGA TGCAAGAGTT GCTCGCTTAT
CTGGAAAACT GGATCCGTAT CGCGGGTATT CCGCCCTATA ACAAGCTGAA GAAAAAAGGT
GAACTGAAGT TTATTCTGCT CACCCGCAGT GAAAACAGCG GCCAATTTAT GCTGCGTTTT
GTGGCACGCA GCCATGCGGT GCTTGAGCGA ATTGAACGCA ATTTGCCGAC ATTGATTGCG
GCTTTCCCGA CGATCGAAGT CGTTTCCGTC AATATCCAGC CGGTGCATAT GGCGCGTTTA
GAAGGTGAAG AGGAAATTTT CCTCACCGAA ACGCAAAGCC TGCTTGAACA GTTCAACGAT
GTGCCTATGG TGATCCGCCC GAAAAGCTTT TTCCAAACTA ATCCCCAAGT GGCTGAGCAG
CTATACGCGA CCGCGCGTGC TTGGGTGCGC GAGATTGCGC CAACACAAAT GTGGGATCTG
TTTTGTGGCG TTGGTGGCTT TGCGCTGCAT TGCGCCGCGC CAAACACTGC TGTGACGGGC
ATTGAAATTG AACCAGAAGC GATTGCCAGT GCGCAACGTT CGGCGCAAAT GATGGGGATT
GATAATCTCA GCTTTGCAGC GCTCGATTCG GCCAAGTTTT CACAAAGCCA GATGAGTGCA
CCGGAGTTAG TGTTGGTCAA TCCTCCACGT CGTGGTTTGG GCAGCGAACT GACTGCGCAG
TTGGAAGCGC TCGCGCCACA ACACATTCTT TATTCCAGCT GTAACCCGCA GACCATGGTC
AAAGACATCG CTGAGCTCGC CAGCTACCAA ATGAGTCGCG TGCAGTGGTT TGATATGTTC
CCGCATACAG ATCACGCCGA AGTGCTGACC TTGTTGGTCA GAAAATAG
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| Protein sequence | MQCEFFIQKR CTSCHQCAQP YSQQVENKDQ QLRELIAPAM DVQWLPPVTS ADTAFRNKAK
MVVLGAAHAP ILGIEDAQGQ PLSLVTCPLY PQPMQELLAY LENWIRIAGI PPYNKLKKKG
ELKFILLTRS ENSGQFMLRF VARSHAVLER IERNLPTLIA AFPTIEVVSV NIQPVHMARL
EGEEEIFLTE TQSLLEQFND VPMVIRPKSF FQTNPQVAEQ LYATARAWVR EIAPTQMWDL
FCGVGGFALH CAAPNTAVTG IEIEPEAIAS AQRSAQMMGI DNLSFAALDS AKFSQSQMSA
PELVLVNPPR RGLGSELTAQ LEALAPQHIL YSSCNPQTMV KDIAELASYQ MSRVQWFDMF
PHTDHAEVLT LLVRK
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