| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0024 |
|---|
| Symbol | |
|---|
| ID | 5134627 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | - |
|---|
| Start bp | 27752 |
|---|
| End bp | 28657 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640530347 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001214865 |
|---|
| Protein GI | 147671947 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 0.668164 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGCGC GTAACCGAGT GATCTGGAAT GAAGGGCTAT TTATTAAGCC GCAACATTTC
CAGCAACAGC AGAGATATAC GGAGTACTGC CTAGACGAGC GCCTGAGCAC CGTGAGCCGT
TACTTGTATG GGATTTCCGA GTTGTCGCTC AACCCGGAAT ACCTCTCGTT TGGCCGTATT
GCGATTGAGC GAGCGGTCGG CGTGATGCCC GATGGCACCA CCTTTCGTAT TCCTCAAGAA
GATCATCTTC CCGATGCGCT CGAAGTGACC GATGCGTCAT TGGCAAACCA GATTGTCTAC
TTAGCCGTAC CGCTACGTAG TGAGTCGCTG ATGGAGATTA ACTGGCCAGA AGAGCGTGGT
ACGGGGCGCT ATGTCAGCCG TCGTCTCGAA GTGCGTGATG TCCACAGCGT GCAGGGTGAT
ACCACGACGA TTGATGTTTC CCCTGTGCGT TTGCAACTCA TGCTTGAGCG AGAGGATCGC
AGTGCGTATG CCTCAATTGC TATTGGCCGT ATTTTAGAAA AACGTCCTGA TGGCAGTGTG
GTGCTCGATC CGGATTTCAT CCCTTGTCAC TTGAATGTGG TGGGCATCTC TGCGCTGCAC
CGCTTTATTA ATGAGATGTC AGGCCTGATG CGTGAGCGAG CGAAAAATAT TGCTCAGCGG
ATCAGCTCTC CAGCACAAGG TGGGGTTGCT GATGTTTCGG ACTTTATGCT GCTGCAAGCT
TTAAACCGTC TGCAACCACA AATGAAGCAT TTGGCAGAGC TGCGCAGCTT ACACCCAGAG
CGTCTGTTTG AATGTCTCTC GTGTGTGTGT GTGGTGAGCT GGCTACCTTT ACTGACGAAA
GTCGTCTGCC GCCCAGTTTG CCAAGCTATA ACCATGATTC ACCCAGCCAC TCTTTCCAGC
CGCTGA
|
|---|
| Protein sequence | MFARNRVIWN EGLFIKPQHF QQQQRYTEYC LDERLSTVSR YLYGISELSL NPEYLSFGRI
AIERAVGVMP DGTTFRIPQE DHLPDALEVT DASLANQIVY LAVPLRSESL MEINWPEERG
TGRYVSRRLE VRDVHSVQGD TTTIDVSPVR LQLMLEREDR SAYASIAIGR ILEKRPDGSV
VLDPDFIPCH LNVVGISALH RFINEMSGLM RERAKNIAQR ISSPAQGGVA DVSDFMLLQA
LNRLQPQMKH LAELRSLHPE RLFECLSCVC VVSWLPLLTK VVCRPVCQAI TMIHPATLSS
R
|
|---|
| |