| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0016 |
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| Symbol | |
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| ID | 5134613 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | - |
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| Start bp | 16690 |
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| End bp | 19716 |
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| Gene Length | 3027 bp |
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| Protein Length | 1008 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640530339 |
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| Product | hypothetical protein |
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| Protein accession | YP_001214857 |
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| Protein GI | 147671876 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 44 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGATTGGTG ATGAATCTGT CCTGATTGAT CCTGATGGTG AGCTGTTAAC GCAAGGCAAT
CGTAGTGAAG AAAATGATGG TGCGTTAGAG CGCCGCTTAT GGTTGCATTT TGTCGATTGG
CTAGACCGCA CTCGTAGCCG CCGCCCGTTA AACGGCATCG TGTTGGCGTT GGATGTGGCG
CATCTTGCTA CCGCCACCGC CTCAGAGCGT AAAGCTTATG CCAATTTGCT GCGTGCTCGT
CTGCGTGAGT TGATGGAAAC CTTATCGACT CGTCTGCCGG TGTACATTGC ACTGACTAAG
CTCGACTTAC TGCACGGTTT TGAGCCTTTC TTTAAGCACT ACACCAAAAG TCAGCGCGAA
GAGGTGTTGG GTTTTACCTT CTCAATGGAT TCGGTAGATA ACCTAGATTC ATGGTTGGAA
GAGTTTGCCA GTGAGTACAC TCAATTTGTG TCACGAGTTA ATGGCATGCT GCCGCATGCG
GTCGCAGCGC CAATGACGCT TGAAGAACGT AACGCGATTT ACAGCTTCAC GCGTCAAATC
TCAGGTTTGA AAGAGATTTT GCAACAGTTT TTCCAAGAGG CTTTGGCGAG CGATCAATTC
TCAACGTCAG CGCTGGTGCG TGGTGCCTAT TTCACGTCGG TTTACCAACA AGGTGTACCT
ACCAACGCTT TTGATGATGC GGCTTCCCGT CGTTATGGTC TGTCTCATGC GATTAATACG
GCGCAGCGCG CGAAAAACTC CACGGTCTAT TTCACGCAAA AACTGTTTAC CCACATCATT
TATCCTGAAG CGGGTTTAGC GTCGGATAAT TTCCGGGTTG CAAAAAACAA ACGCCGTTTG
ATGGGGCTCT CTTTTGTCGC ATGCTCAGTG GCGACTTTGC TGTTGGCGGG AACTTGGCAT
CGTAACTACC TCAATAACGT GCAACACGCC GATACTGTAT TAACCAAAGT GAATCAGTAT
AAAGAGCAGT TCCCGACCAG CCGTTCATTG GCCTCACAAA GAGAGGTATT GGATCCGTTG
AACAAGATCC GTGAGGCGAC ACTGGAGTTT GGTTTCTTCC GTGATAAACC TCAGTACATC
TCCGATTTTG GTCTCTACCA AGGGCACACC ATTGGCCCGA AAGTAGAAGA GACCTACTTA
AACTTACTCG AAACTCGCTT CTTGCCTCTG TTGATGGCGG ACACCATTGT TGCGCTCAAT
CAAGCTGAGA CAGATGAAGA AAAATTAGCG GTGCTGCGTG TGTATCGCAT GCTGGTCGAT
AAAAGTGGTC GTTACCAAGA CTATGTGATG GATTATTTTG CGAAGTATTG GCAAAAATCC
TTCTCAGGTC AGCGTCAAAT TCAGGAAGAG CTGCTCGGCC ACTTAGATTA CGCGATGCGT
CATACGGACC TCACTGCAGA GAGGCTCAAT GGTGATAAAG GGGCGGAGCA GGTGATGCGC
CCTTACGATA AAGTGATTGC TCGTGCTCAG GTTGAACTGG GTTCAATGCC AAACGACCAG
CGCGTCTATC GTAACTTGAA ATTGAGCGCA CAAACGGTGC TTGGTCCTTC GGTTAACTTG
CGTAGCTTGA TTGGGCCGGT GTTCGATGTG GTGTTTGAAG AGCGCGTTCT TAACAGTAGC
AGCCTGTTTA TTCCTCAAAT GCTCACCAAG CGTGGTTTTG ATGACTACTT TATGCCGCAA
TCTGAATCGG TCTCTGAGCT GGCACTGATT GACAGTTGGG TTCTGGGACA GAGCAAAACG
GCACAGTTTA GTGAAGCAGA CAAGCAGGCA CTGCGCGAAA AAATCCGCGA TCTTTATGTG
GCGGATTACA CCAACACATG GCGCGCGGCA CTCAATGAAA TTGATGTGAA GTATTTCAAT
GACATCAATG ATGCGGTCAT GGTTTTGGAA AATATCACCA GTAACCTTGA GCCGATGCAG
CGTCTACTGC GCACATTAGA TGACAACACC CAACTGTACA GTGCGTTACC TAAAGATGAA
TCGGCGTTAA AAGAGCTGCT GAAAAGTCCG AAATACAAAG TGGCTTCGAT GATTGAAACT
CCGTTTGCTG ATCTGAACGG TATGCTCAAA CCGGTGGGCA GCAAACCAGC GTACATGACG
GAAGTCTTGG CTTCGGTGGA TGAGCTGAAA AGCTACTTGA AATCGATTCA AGATGCTCCC
GATGTCGGTA TGGCGGCGCT CGATGCGACC AAAGCGCGGG TCAAACTGGT TAATGCTGAC
CCTATCTATA CCTTAAAACG TATCTCGTCA GGACTGCCGA AGCCGCTGGA TAGCATGATG
GCAAAGCTTG CAGATGAGAG CTGGTATGTG GTCAAGCAAG AAGCGATCAA GCATCTGGAA
GTTCGCTGGA CGGAGGATGT GTATAAAACC TTCCAAAGCA AGCTGGCTGG GCGTTATCCA
TTCAACCCCG CATCAAATAA AGATGTTGCC TTGGCCGATT TTGAAGCCTT CTTTGCGCCG
AATGGCACGT TAGACAACTT CTACAATCAG CAACTGAAGA TGTTTATTGA TGAGAACATC
AGCGTCGCGT CGGATGACTC AGCGCAGTCG ATCATTCGTA AAGAAGTGCT GGATCAGATC
AAGCAAGCGC AGAAAATTCG TGAGGCTTTC TTCAACCGTA AAGGGATTTT GGATGTCAGC
TTCTCGGTTG AGCCGCTCAG TTTGAGTAAC AACAAGCGTC GTAGTGTGCT GAATGTGGAT
GGTCAGTTCT TAGCTTACAG CCATGGTCCG CGTGAAAATG TGGAGCTGAT TTGGCCTAAC
ACGCTGCGTG ATTCTGCGGT GTCTAAGGTG ACCTTGATTC CAACCCAAAC CAATATGTCA
CCGCGCAGTT TGCAAATCCA AGGACCGTGG GCATTCTTCC GCTTATTGGA TCAAGGTGAT
GTGGTTTCGG CGAGTCAAAC GTCGGTTGAT TTCAAATTTA TCGTCGATGG CGGTGAGATG
ATCTACCGTA TTAACGCAGA GGCCGATGCC AACCCATTTA CCGAACGCCT GTTCAAGTCG
TTCAAACTGT CTAAAACACT CTATTAA
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| Protein sequence | MIGDESVLID PDGELLTQGN RSEENDGALE RRLWLHFVDW LDRTRSRRPL NGIVLALDVA
HLATATASER KAYANLLRAR LRELMETLST RLPVYIALTK LDLLHGFEPF FKHYTKSQRE
EVLGFTFSMD SVDNLDSWLE EFASEYTQFV SRVNGMLPHA VAAPMTLEER NAIYSFTRQI
SGLKEILQQF FQEALASDQF STSALVRGAY FTSVYQQGVP TNAFDDAASR RYGLSHAINT
AQRAKNSTVY FTQKLFTHII YPEAGLASDN FRVAKNKRRL MGLSFVACSV ATLLLAGTWH
RNYLNNVQHA DTVLTKVNQY KEQFPTSRSL ASQREVLDPL NKIREATLEF GFFRDKPQYI
SDFGLYQGHT IGPKVEETYL NLLETRFLPL LMADTIVALN QAETDEEKLA VLRVYRMLVD
KSGRYQDYVM DYFAKYWQKS FSGQRQIQEE LLGHLDYAMR HTDLTAERLN GDKGAEQVMR
PYDKVIARAQ VELGSMPNDQ RVYRNLKLSA QTVLGPSVNL RSLIGPVFDV VFEERVLNSS
SLFIPQMLTK RGFDDYFMPQ SESVSELALI DSWVLGQSKT AQFSEADKQA LREKIRDLYV
ADYTNTWRAA LNEIDVKYFN DINDAVMVLE NITSNLEPMQ RLLRTLDDNT QLYSALPKDE
SALKELLKSP KYKVASMIET PFADLNGMLK PVGSKPAYMT EVLASVDELK SYLKSIQDAP
DVGMAALDAT KARVKLVNAD PIYTLKRISS GLPKPLDSMM AKLADESWYV VKQEAIKHLE
VRWTEDVYKT FQSKLAGRYP FNPASNKDVA LADFEAFFAP NGTLDNFYNQ QLKMFIDENI
SVASDDSAQS IIRKEVLDQI KQAQKIREAF FNRKGILDVS FSVEPLSLSN NKRRSVLNVD
GQFLAYSHGP RENVELIWPN TLRDSAVSKV TLIPTQTNMS PRSLQIQGPW AFFRLLDQGD
VVSASQTSVD FKFIVDGGEM IYRINAEADA NPFTERLFKS FKLSKTLY
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