Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DehaBAV1_0170 |
Symbol | |
ID | 5131493 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dehalococcoides sp. BAV1 |
Kingdom | Bacteria |
Replicon accession | NC_009455 |
Strand | + |
Start bp | 171591 |
End bp | 172550 |
Gene Length | 960 bp |
Protein Length | 319 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640529073 |
Product | integrase catalytic subunit |
Protein accession | YP_001213639 |
Protein GI | 147668821 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3316] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0337001 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGAAAG GAATTTTACC AATAGAATGC AAATATTGCG GTTCAAGGCA TACCCGCCGT TATGGGCATA GCAGAGCTCA AAAACAACGT TGGTTGTGTA ACGACTGTTG CCATACCTTC GTGGAAACAA GTGCCCAGCC GGGCATGAGA ACACCGCCTG AACAAATCGG GGCGGCAGTC TCCATGTTTT ATGAAGGCTT GAGTTTAAGT GCTATATGCC GTCAAATGAA ACAGATACAT AATATAAGCC CTTCAGACGG CACAGTCTAC GGCTGGATTA CAAAGTACTC CAAAGAAGCT ATTGCCAGAG CTAAAGATAT TAAGCCAAAA GTAGGTGATG TCTGGCTATG TGATGAAACA GTCCTGAAGA TAGCAGGCAA GAACATCTGG TTTTATGACA TCATAGACAT GAAAACCCGT TTTCTGCTGG CTTCCCATCT TTCAGACAAG CGTTATCTGG GAGATGCCCG CACTGTACTA CATAGAGCTG GTATTAAGGC AGGTAAGAGT CCTAAGGTAG TTATCACAGA CAGCCTTAAC AGCTATCCTC AAGCCATAGG TGATGTATTC GGGGCTGATG TAAGGCATAT CAAGTACAAG GGAATAACCA AATCCCCCAA CAATAACATC TTGGAACGCT TTCATGGCAC GCTCAAAGCC CGCACAAAGG TAATGCGAGG CTTAAAAAGC ATGGAGACTG CCAGACTATT TACTGACGGC TGGCTGGTTT TCTACAACTT CATGCGTCCT CATGAGTCTC TGGATAATCA GACACCTGCC CATAGAGCTA AGGTTCAATT GCTAAATCAG ACGTGGCATG AAGTAGTCAA GACCTCTGAG TTTAAGGCTG AGCCAGTGAA ATGGCTAGAG AAGCCACCTT CGTTTTTGAA GCAGTCAATT CCCTCAAGCG TAAAGCGAGC TATCGGGCTG GGTAATAAAC TTCCGAGAGG ACTCAGATGA
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Protein sequence | MMKGILPIEC KYCGSRHTRR YGHSRAQKQR WLCNDCCHTF VETSAQPGMR TPPEQIGAAV SMFYEGLSLS AICRQMKQIH NISPSDGTVY GWITKYSKEA IARAKDIKPK VGDVWLCDET VLKIAGKNIW FYDIIDMKTR FLLASHLSDK RYLGDARTVL HRAGIKAGKS PKVVITDSLN SYPQAIGDVF GADVRHIKYK GITKSPNNNI LERFHGTLKA RTKVMRGLKS METARLFTDG WLVFYNFMRP HESLDNQTPA HRAKVQLLNQ TWHEVVKTSE FKAEPVKWLE KPPSFLKQSI PSSVKRAIGL GNKLPRGLR
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