| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_3218 |
|---|
| Symbol | |
|---|
| ID | 5093380 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | + |
|---|
| Start bp | 3834221 |
|---|
| End bp | 3835909 |
|---|
| Gene Length | 1689 bp |
|---|
| Protein Length | 562 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 644742646 |
|---|
| Product | dihydroxy-acid dehydratase |
|---|
| Protein accession | YP_001195554 |
|---|
| Protein GI | 146300963 |
|---|
| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
|---|
| TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAGCG ATGAAGTAAA AAAAGGAGTT CAAAGAACCC CTCACAGATC CTTATTGAGA
GCAACAGGAT TAAAAAATGA AGATTTTGGA AAACCATTTA TCGGCGTTGC CAATTCATTT
ATTGAAATTA TTCCGGGGCA TTTTTTCCTA AATAAAGTAT CTGAAATTAT TAAGGAAGAA
ATCAGGGCAA ACGGCTGTGT TCCTTTTGAG TTCAATACAA TTGGAATCGA CGACGGAATT
GCAATGGGCC ACGACGGAAT GCTGTACTCA CTGCCAAGCC GTGAAATTAT CGCCAACTCT
ATCGAAAGCG TTATGAATGC ACATAAACTC GACGCTATGA TTGCCATTCC TAACTGCGAC
AAAATCGTTC CGGGAATGAT TATGGGCGCT CTGCGGGTTG ATGTTCCAAC TATTTTTGTA
AGCGGCGGGC CAATGTCGAA AGGATATACA AAAAATGGTA CTCCAATTGA TCTGGCTACA
GCTTTTGAAG CCGTTGGAAA ACACGAAGCA GGAAGCATTA CAGATGAAGA ATTATACGAT
ATTGAATGCA ATGCCTGCCC TAGCGGCGGA AGCTGTTCTG GAATGTTTAC AGCAAATTCT
ATGAATACTT TAATGGAAGC CATGGGAATT GCACTGCCCG GCAACGGAAC TATTTTGGCT
CAAACTCCGG AAAGAGAACA ATTATACCGC AAGGCAGCAC GAAGAATTTG TGCCATTGCA
AAAGACCAGC ACGATATTGA AAAGTTTAAA CTAAAGAACA TTCTAAACGA AAATGCGGTA
CGAAATGCTT TTGCGGTTGA TATGGCTATG GGCGGCAGCA GCAACACTGT TCTGCATATG
CTAGCCATTG CGAATGAAGC CAATGTAGAT TTTAAACTAA AAGACATTAA TACCATTTCC
GGCAATGTAT CGCATATTGC TAAAATATCG CCAAGTTTAA GCACCGTTCA CATGGAAGAC
ATAAACAGAG CCGGAGGCGT TAATGCGGTT ATGAAAGAAA TGAACAAAAG AGGTTCTGGT
GTTTTAATTG ATAATCTGAC TATAAGCGGC GAAACTTTAC TGGAAAAAAT TGATAATGCA
GAAATTAAAG ACACGACGAT TATTCATACC ATTGATAATC CGTACAGCAG TGTGGGCGGA
CTTGCTGTTT TATATGGAAA TCTTGCCGAA GAAGGCGCTG TAATTAAAAC GGCAGGACTT
ACAGGCGCAA GAGTTTTTAC AGGAAAAGCG GTTTGTTTTG ACGGTCAGGC CGAAGCCATT
GCCGGAATCA TGATGGGAAA AGTAAAAGCC GGAAATGTAG TTGTTATTCG ATACGAAGGT
CCAAAAGGCG GTCCCGGAAT GCAGGAAATG CTGGCTCCAA CGAGTTTAAT TATGGGTATG
GGACTAGGAA GTTCTGTAGC TTTAATTACA GACGGAAGGT TCAGCGGTGC TACAAGAGGC
GCTTCTATTG GACATGTTTC TCCCGAAGCT GCAGAAGGCG GTATGATTGG CCTGCTTAAA
GACGGCGATG AAATTCATAT TGATGTCGAT CAGTATATCT TGTCGGTTAA CTTATCTGAT
GAAGAAATTA AAACCAGAAA AGCCGCTTTT CAACCCATAA AAAAAGTATT AAACTCAAAA
TGGCTTGGGC AGTACAGAGC TTTAGTTACC AATGCAAGTA ATGGCGCCAT TTTAAAAACT
GATTTATAA
|
|---|
| Protein sequence | MRSDEVKKGV QRTPHRSLLR ATGLKNEDFG KPFIGVANSF IEIIPGHFFL NKVSEIIKEE
IRANGCVPFE FNTIGIDDGI AMGHDGMLYS LPSREIIANS IESVMNAHKL DAMIAIPNCD
KIVPGMIMGA LRVDVPTIFV SGGPMSKGYT KNGTPIDLAT AFEAVGKHEA GSITDEELYD
IECNACPSGG SCSGMFTANS MNTLMEAMGI ALPGNGTILA QTPEREQLYR KAARRICAIA
KDQHDIEKFK LKNILNENAV RNAFAVDMAM GGSSNTVLHM LAIANEANVD FKLKDINTIS
GNVSHIAKIS PSLSTVHMED INRAGGVNAV MKEMNKRGSG VLIDNLTISG ETLLEKIDNA
EIKDTTIIHT IDNPYSSVGG LAVLYGNLAE EGAVIKTAGL TGARVFTGKA VCFDGQAEAI
AGIMMGKVKA GNVVVIRYEG PKGGPGMQEM LAPTSLIMGM GLGSSVALIT DGRFSGATRG
ASIGHVSPEA AEGGMIGLLK DGDEIHIDVD QYILSVNLSD EEIKTRKAAF QPIKKVLNSK
WLGQYRALVT NASNGAILKT DL
|
|---|
| |