Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Fjoh_3127 |
Symbol | |
ID | 5093123 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Flavobacterium johnsoniae UW101 |
Kingdom | Bacteria |
Replicon accession | NC_009441 |
Strand | - |
Start bp | 3712984 |
End bp | 3715995 |
Gene Length | 3012 bp |
Protein Length | 1003 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 644742555 |
Product | TonB-dependent receptor |
Protein accession | YP_001195463 |
Protein GI | 146300872 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00375079 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGAAAAAC TTAAACTTTT ATTATTAGCC TTATTCTTTG GCTTCTCCAT TAATACCTGG GCACAAAAAA CAGATGTGAC TGGTGTAGTT TTAGATGACA AAGGAATTCC ACTTCCAGCC GCTAACGTAC TAGAAAAAGG TACGAGTAAT ACTGTAACGA CAGATTTTGA TGGGAAATTT AGAATTTCGG TTTCAAACAA AAATGCAACT CTGGTATTTT CTTTTATAGG ATTTGAAGAT CAGCCAGTAA AATTAGACGG AACAAAAACA AATCTTTCCA TAAAGTTACA ATCGGGTACT ACTAACCTGG AGCAAGTTGT AGTAGTAGGT TATGGTAAAG GTTCTCGTAA AAACTTAACT ACAGCTGTAA CTTCTATAAA AGCAGATGAA TTAAACCGAG GTGCTATCAG CGATGTTGGA CAGCTTTTAC AAGGTAAAGT TTCTGGTTTA AATATTTCAT CCAGCGGCGA CCCTACAAAA ACTGCTTCGG TAGTTTTACG TGGTGCATCT ACATTAAATA GTTCGCAAGG TCCTTTTTAT GTAATTGATG GAGTTCCCGG AGTAGATATT TCAATTATTT CTCCAGATGA CATTGCTACG ATCGATGTTT TAAAAGATGC CGCTGCAACA GCTATTTATG GTAACCGTGC AGCAAATGGT GTAATCATGG TAACTACTAA AAGAGGAAGT AAAGACAGAA CACAGATTGC TTATAATGGA TATTATGGTT TTGAAGAAGT TTCGAACGAA CTGAATATGA TGAATGCAGA TCAGCTTAGA GCTTTTACAA CTAAAAACAA TCTGAACTTT ACACCGGAAA ATGATAAAGG AGCTAATACA GACTGGCAGA AAGAAATTTT AAGATCAAGA CGTGCCGTAT CCAGCAGTCA TAATATTTCG ATGAGCGGTG GCGGCGAGCA CGGAAATTAT ACGGCAAGTA TTACTTCGAT CCAAAAAGAA GGAGTATTGT TAAAAAGTGA TTTCTCTCGT GTTATTGCCC GTTTATCTGT AGATCAATAT GCTTTTGATG ATAAACTTAA AATAGGTCTT AATGTTACCA ATTCGACAAG TAATTATACC AATGTTCCAC AACGTAATAC GGTACTTTTA CAAGCGGTAA GCCACCTTCC GGTTTCACCG GTAAGAAATC CTGATGGAAG CTTTTTCGAA AACTTTGTAA GCACAGGATA TTTTAACCCA GTTGCTTTAA TTGAGCACGG AACAGATGAA ACAAAAACAA ATAATCTTGT TGGAAACATT ACTGCAGAAT TAAAACTGCC TTGGGGTTTT ACGTATAACT TAAATGTGGC ACACCAAAGA TTATCTACAT CTCATGGAGA GTTCTATGAT AGTTATTATT CAAGATACAA TAGTGCGAAT TTTTACAACA ATCCAGATCC GCCTCAAACA AAAACGTTGA TTAATTTTGG TGTAAATGGT TCTGCATTAA GAAATTCGTA TGATAATACA AACAACATTG TTGAGAGTTT CCTAAACTGG GATAAAACTT TAGGCGGCCA TAAAATAAAA GCTGTTTTAG GATATTCATG GCAGGAAAAC ACTTATGGTG ACGGATTCCA AGCAACAGCA ACTAATTTTC CTGTAGATAA TGTTGGGTAC AATAACCTTG CTTTGAGCAA CTATACTTCT GTAAACGGTT ATGTTGTAAA TTTTGGAGAC AGTAAAGCAT ATCAAAAAAC ACGTTTAATT GGAGAATTCG TTCGTTTGAA CTATGGTTAC AAAGACAAAT ACCTTTTACA GGGAACATTA AGAAGAGACG GAGGTTCTAT GTTTGGAGCT AATAACCGCT GGGGATTTTT CCCTTCTGTG GGTGGAGCCT GGAGAGTTGA CAAAGAAAAC TTCATGAAAA ATCAAAACTT CTTTACTGAC TTAAAATTCA GAGGAAGTTA TGGTGTAACA GGGAACTCAT CAGGGTTTAA TGCTTATACT GCACAGTTTA TCTCAGGAAG TGTTGGAACT TTTTATTACA ACGGACAGCA GATTGGAGCT TACGGACCAA ATCAGGCAGC AAATCCAGAT TTGAAATGGG AAAAAACAGC AACAGCAAAC GTTGGGGTTG ACTTTTCTAT CTTAAAAGGA AAAATTACTG GTTCTGTTGA TGTTTACGAC AAGAAAACAA CTGATATGAT TTTTAACTAT GCTGTAAATC CAGTACTTGT GCCAGTAGGA ACAATTGTAG CAAACGGAGG AACAATGTCT AATAAAGGTA TTGAGGTTAG TTTAGGGGCA ACACCTGTAA AAACGGCAAA TTTCAGCTGG TCTACCAATT TGAACCTGGC AAGCAACAAA AACAGAATCG TGAAATTGAC AAATCCGTTG TTTATTGGTG GAGACTCTAT TAGAAGAGTA CAGCCTGATG GAGGCGGACA AACAGGAAGT ACTTTACAGA TTTTTAAAGA AGGAAAACCT CTTGGACAGT TCTTTACCCT TAAATATGCA GGAAAAGATG CAAACGGAGT TTCACAGTAC TACGATAAAA ATGGAAATTT AACAACAACA CCATTAAACG GAGTAGATTA TCATTATGTT GGAGATGCAC AGCCAAAACT ATTATTAGGA TGGGGAAATA CGTTTACTTA CAAAAAGTTT GATTTAAGTG TGTTCTTCAG AGGAGTATTC GGAAACAAAA TTTTCAATGC AACACGTGCC GATTTATTTA GGCCGAGTAC CGCAATGACC ACAAATATTT TGGTTGACGC TCAGGACGAA TCGCCAAATG ATTTGAACTC TTATAAATAC TCGTCAAGAT TTATTGAAGA CGGAAGTTAT TTAAGATTAG ACAACATGAC TTTAGGGTAC AATTTTGGTA AAGTCGGGAA ATTTATACAA AGCGTTCGTG TTTACGAAAC GATAAATAAC CTTTTTGTAA TTACCAAATA TTCAGGAATT GATCCGGAAG TTGAACAAGG AGGAACCGCT CCGGGTGTAG ATTCGAACAA CTTTTATCCT AAAACCAGAA CTTTTATGTT TGGTTTAAAC GTAATTTTCT AA
|
Protein sequence | MEKLKLLLLA LFFGFSINTW AQKTDVTGVV LDDKGIPLPA ANVLEKGTSN TVTTDFDGKF RISVSNKNAT LVFSFIGFED QPVKLDGTKT NLSIKLQSGT TNLEQVVVVG YGKGSRKNLT TAVTSIKADE LNRGAISDVG QLLQGKVSGL NISSSGDPTK TASVVLRGAS TLNSSQGPFY VIDGVPGVDI SIISPDDIAT IDVLKDAAAT AIYGNRAANG VIMVTTKRGS KDRTQIAYNG YYGFEEVSNE LNMMNADQLR AFTTKNNLNF TPENDKGANT DWQKEILRSR RAVSSSHNIS MSGGGEHGNY TASITSIQKE GVLLKSDFSR VIARLSVDQY AFDDKLKIGL NVTNSTSNYT NVPQRNTVLL QAVSHLPVSP VRNPDGSFFE NFVSTGYFNP VALIEHGTDE TKTNNLVGNI TAELKLPWGF TYNLNVAHQR LSTSHGEFYD SYYSRYNSAN FYNNPDPPQT KTLINFGVNG SALRNSYDNT NNIVESFLNW DKTLGGHKIK AVLGYSWQEN TYGDGFQATA TNFPVDNVGY NNLALSNYTS VNGYVVNFGD SKAYQKTRLI GEFVRLNYGY KDKYLLQGTL RRDGGSMFGA NNRWGFFPSV GGAWRVDKEN FMKNQNFFTD LKFRGSYGVT GNSSGFNAYT AQFISGSVGT FYYNGQQIGA YGPNQAANPD LKWEKTATAN VGVDFSILKG KITGSVDVYD KKTTDMIFNY AVNPVLVPVG TIVANGGTMS NKGIEVSLGA TPVKTANFSW STNLNLASNK NRIVKLTNPL FIGGDSIRRV QPDGGGQTGS TLQIFKEGKP LGQFFTLKYA GKDANGVSQY YDKNGNLTTT PLNGVDYHYV GDAQPKLLLG WGNTFTYKKF DLSVFFRGVF GNKIFNATRA DLFRPSTAMT TNILVDAQDE SPNDLNSYKY SSRFIEDGSY LRLDNMTLGY NFGKVGKFIQ SVRVYETINN LFVITKYSGI DPEVEQGGTA PGVDSNNFYP KTRTFMFGLN VIF
|
| |