| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_0412 |
|---|
| Symbol | |
|---|
| ID | 5093295 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | - |
|---|
| Start bp | 424389 |
|---|
| End bp | 425075 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 29% |
|---|
| IMG OID | 644739806 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001192767 |
|---|
| Protein GI | 146298176 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
[TIGR02254] HAD superfamily (subfamily IA) hydrolase, TIGR02254 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.251676 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATACTA ATATTACAGA CATTTTTTTT GATTTAGATC ATACATTGTG GGACTTTGAT
AAAAACTCTC AAATGGCTTT TGATCGTATT TTTAAAAACA ATTTCGAAGG AATCAAAATT
GAAGATTTTA TTGAAAAATA TCTTCCAATA AACCAGGAAT GCTGGAGATT ATATCAAAAC
GATCAAATTA CGCATCAGGA ATTGCGTTAT AATAGACTGA AGCTTTCTTT TGATGCTTTG
AACTATTCAA TGACGGATGA AAATATAGAT CAGATTTCAA ACGATTATAT AGAGTTTCTA
ACAGATAATA ATTATCTTTT TGATGGTGCT ATTGAGGTTC TGGAATATTT AAAACCAAAG
TATAAACTTC ACATTATTAC GAATGGTTTT GCTCATGTTC AGGAAAAGAA AATTAATAAT
GCTTCGCTTG GAGGTTATTT TACCACGATT ACGAATTCTG AATTAGCAGG TGTTAAAAAG
CCAAATAGTA TTATCTTTGA TTATGCTGTC AATTTGGCCC AGTCATCAAA AGAAAACAGT
ATTATGATTG GAGATGATTT TGATGCCGAT GTTAACGGAG CTTTAAATGC AGGTATGGAC
GCTATTTTTT TTAACGTAAA AAATATCGAA ACACCTCAAA ACTATAAACA AATTAATCAT
TTATTAGAAC TTAAAAAATA TTTATAA
|
|---|
| Protein sequence | MNTNITDIFF DLDHTLWDFD KNSQMAFDRI FKNNFEGIKI EDFIEKYLPI NQECWRLYQN
DQITHQELRY NRLKLSFDAL NYSMTDENID QISNDYIEFL TDNNYLFDGA IEVLEYLKPK
YKLHIITNGF AHVQEKKINN ASLGGYFTTI TNSELAGVKK PNSIIFDYAV NLAQSSKENS
IMIGDDFDAD VNGALNAGMD AIFFNVKNIE TPQNYKQINH LLELKKYL
|
|---|
| |