| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_2190 |
|---|
| Symbol | |
|---|
| ID | 5105411 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 2101742 |
|---|
| End bp | 2103610 |
|---|
| Gene Length | 1869 bp |
|---|
| Protein Length | 622 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640508084 |
|---|
| Product | AAA ATPase |
|---|
| Protein accession | YP_001192253 |
|---|
| Protein GI | 146304937 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0020112 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.0000768998 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTTCT TGTTCGGAAG TAAAAATGAC GGCCAAAAGA CAGCACAAAA AACTAGGTAC
TATCGTTTAG AAGGGATCCC ATTCTTCTTA CTGAGTCCTG AGGATCGTGA TATGAAAATG
AAAGAACTAT CGACGCTCTT ATCACAAGCA GAGCGTGGCT ATATCTACAT TAGCAGAGCT
CCAGGTGAGT ATGAGTTCGA AGGGACGAAA TTCCCCATCA TTACATCTTC TTTTAATTTA
ATCACAGAGA AAGAGATGGA CCTCGAAACA GCAGAGCCTC CCAAGAGACC TAAGATAAAG
AAGGAACATG CTAAGTACTT GCAAACAATG GAAGGATATG CTAGAGTTTT AGTATCATAT
AGATATAGTA CCAGAATTTA CGAGGGAGCT CTTGGAAGGG TCGACTTCAA ACAGATGAAC
CCAGAGCTCT TTGAAACGAT TATTCAGTTT CAAAAGATTC CCCAACTCTC TGTTAGAAAT
TATCTCAATT CGCTAGAAAT GAAGAAGATG AAGATGGCCA AGTATGCTAA TGTCTCAACT
GCCGTTGAAG AAATGTTAAC AAGTGGAACC CAACTTAAGA AGGACATAGA CGAGGAAGCT
GCGGAGCCCA TCAAGTTCCG ATATATCTTT GTAATCCATG CAAAGACCCT ACAAGAGCTC
GAAAGTCTAA CAAGGGAATT AATGAAGACC GCACAAGAAA ACGGGGTGCT CCTCGATACT
CCATGTTGCG CTCAGAGTGA GTTGTATAAT TTTGAAGGAG GTGTAGGGTA TCGCATAAGC
AGCAACGTCA GTCTCGCTAA GTTCTACCCC CTGGTCGGGT TTAACTTAGT CGAGCCTAAT
GGCATCTTCT TAGGAACGGA TGAAAAAGGA GCTCCAATAT CAATCAATCC ATATTTGGCG
ACCAACGGAA GACAAAATCC TCATTGGGCG ATAACAGGAA CAACTGGAGC AGGAAAGACT
ACTACAGGTG CCGCTTTGAT TGATAGGCTA CGCAGGGCCC ATGGCGAGAT ATATGTTATT
ATCATCGATC CGATGAGCAA CTATAACCGT TTCTTCACTA ATGAAGCGGA TTTGAATATC
GCATTCAAGG ACGGGGACTA TGTTGGACTG GATCCGGTAG CTTTAGCAGC TGAAGGAGTG
GTCTCAAGCG GTGACATAGC AGACTTCCTC ATCGAGTCAT ATGGAATTCC ATTGGAGCTC
CGAGGAATCC TAGTGTCCCA GTTGGAGCAA AACAGGAGTT TGAAGGACCT AACAGACAAT
CTAGAGAGCT TGGCTAGTAA GAAGTTTGCG ACTGAATATA GAAAATTAGA GAACTTCTTA
CTCAATATGA CTAGCGGAGC TGACAAGTAT GTTTTCACTG GAACTCCTCC TAACCTTAAG
GGCAAACGTT TCATCATACT AGGGCTTCAA ACTGAGGATA CGAGAAAGAA GAGATTAGCA
GCTACAATGT TAATGCTTTA TGCCTATTCG TTAATCAATA AACTCCCTCG TTCAGTCGAG
AAATTGATAT TGATAGATGA AGCTCACTTC CTATTCGAAT ACCAGAGTGT GGCGAAAATC
ATAGCGATAA TTTACAGGAC TGCTAGAGCC CTTAAAACCA GTATGATTAC TATGACACAG
CTCATTCAAC ATTTTAATAT GAATCAATAC AGCAAGGAAG CATGGCAACT TGCAGATAAC
AAACTGATTC TTAAACAGGA AAAGGAGGCT AAGGACGACT TAGTTAACTT GGCTCACCTG
AGCGAAGAGG AGGTCGATTA CGTGCTCAAA TCTTCAAGGG GTAGGGGGAT ATTGAGGACA
GGCGCAATAA CGACCCATAT TCAGGTCCAG CTCACGGAAG AAGAGAAACA GCGCTGGAGG
ACTGAGTAA
|
|---|
| Protein sequence | MSFLFGSKND GQKTAQKTRY YRLEGIPFFL LSPEDRDMKM KELSTLLSQA ERGYIYISRA
PGEYEFEGTK FPIITSSFNL ITEKEMDLET AEPPKRPKIK KEHAKYLQTM EGYARVLVSY
RYSTRIYEGA LGRVDFKQMN PELFETIIQF QKIPQLSVRN YLNSLEMKKM KMAKYANVST
AVEEMLTSGT QLKKDIDEEA AEPIKFRYIF VIHAKTLQEL ESLTRELMKT AQENGVLLDT
PCCAQSELYN FEGGVGYRIS SNVSLAKFYP LVGFNLVEPN GIFLGTDEKG APISINPYLA
TNGRQNPHWA ITGTTGAGKT TTGAALIDRL RRAHGEIYVI IIDPMSNYNR FFTNEADLNI
AFKDGDYVGL DPVALAAEGV VSSGDIADFL IESYGIPLEL RGILVSQLEQ NRSLKDLTDN
LESLASKKFA TEYRKLENFL LNMTSGADKY VFTGTPPNLK GKRFIILGLQ TEDTRKKRLA
ATMLMLYAYS LINKLPRSVE KLILIDEAHF LFEYQSVAKI IAIIYRTARA LKTSMITMTQ
LIQHFNMNQY SKEAWQLADN KLILKQEKEA KDDLVNLAHL SEEEVDYVLK SSRGRGILRT
GAITTHIQVQ LTEEEKQRWR TE
|
|---|
| |