| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0270 |
|---|
| Symbol | |
|---|
| ID | 5103890 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 227300 |
|---|
| End bp | 228475 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640506176 |
|---|
| Product | acetyl-CoA acetyltransferase |
|---|
| Protein accession | YP_001190371 |
|---|
| Protein GI | 146303055 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0183] Acetyl-CoA acetyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00178908 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.140204 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACCA ACCTAAAGTT CAGGAGGGTC GCGGCGATAG GTGCGGGAAT GACACCCTTC
AGAAGGAGGA TGTTGGAGAC ACCACAGGAA ATGGCCTGGG AGGCCTCTAG GAGAGCCCTT
GATGAGGCTG GCCTGGAACT TAGGGACATA GACTGTGTGG TAATTGGGAG CGCACCAGAT
GCCTTCGACG GAGTTCACAT GAAGGGGGAA TACCTGGCAC ACGGAGCGGG AGGGGTAATG
AGACCCAGTA GCAGGGTATA CGTTGGAGGA GCAACGGGGG TCATGACGGC CATTGCAGGA
TGGTACCACG TGGCCAGCGG GATGTGCAAG AAAGTGCTCG CTGTGGCAGA GGAAAAGATG
AGTACAGGTA GGCCCCATCC CCAAGCCGTT TTTAGGTACA TCTGGGATCC AATCACGGAG
AAACCCCTGA ACCCCAACCT AATCTGGATC TTCGCCATGG AGATGCACAG ATACATGTTC
GTGAACAAGG TGAGCAAGGA AGAGATTGCC CTAGTCTCGG TGAAGAACAA GAGGAACGCT
GCAAGCAATC CCTATGCACA ACTGGGGGGA GAAATCACCG TGGACGATGT GCTGAGAAGC
GAGGTTCTAG TGTGGCCAGT GCAACTTCTA GACGTAAGCC CAGTTAGTGA TGGGGCAGCT
GCCATGGTTT TCGTGGACGG TGACATTGCG AGGAGATACA CTGATACCCC CATATGGGTT
GAGGGAGTTG GATGGACCCT CGATAACACC TCTTGGCCCA ACAGGGAACT TGCGTATCCC
AGATACCTTG AGAACGCAGC TAGGATGGCC TACAGGATGG CAGGGATAGA GAGACCTCAG
AAGGAGATAG ACGTCGTGGA GCCATATGAT CCCTTCGATT ATAAGGAACT TCATCACCTG
GAGGGCCTCA TGCTAGCCAA GAGAGGCGAG GCACCCCTAC TTCTGAAGGA AGGGTTCTTC
GATAAGGACG GGGATATACC CAGTAGCCCC TCAGGAGGAC TTCTAGGAGT TGGGAACCCC
ATAGCTGCAG CAGGACTAAT GAAGGTCATT AGCATTTACT GGCAACTTAA GGGAACAGCT
GGGAAGATGC AGGTGAAAAG GCCAGTTCAC ACTGGCGTAG CCCAGGCGTG GGGTGACCTA
ATGCAGGCCT CCACGGTCAT GGTTATGAGA AATTGA
|
|---|
| Protein sequence | MKTNLKFRRV AAIGAGMTPF RRRMLETPQE MAWEASRRAL DEAGLELRDI DCVVIGSAPD
AFDGVHMKGE YLAHGAGGVM RPSSRVYVGG ATGVMTAIAG WYHVASGMCK KVLAVAEEKM
STGRPHPQAV FRYIWDPITE KPLNPNLIWI FAMEMHRYMF VNKVSKEEIA LVSVKNKRNA
ASNPYAQLGG EITVDDVLRS EVLVWPVQLL DVSPVSDGAA AMVFVDGDIA RRYTDTPIWV
EGVGWTLDNT SWPNRELAYP RYLENAARMA YRMAGIERPQ KEIDVVEPYD PFDYKELHHL
EGLMLAKRGE APLLLKEGFF DKDGDIPSSP SGGLLGVGNP IAAAGLMKVI SIYWQLKGTA
GKMQVKRPVH TGVAQAWGDL MQASTVMVMR N
|
|---|
| |