| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0051 |
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| Symbol | |
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| ID | 5104629 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 46082 |
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| End bp | 46825 |
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| Gene Length | 744 bp |
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| Protein Length | 247 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640505946 |
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| Product | DNA polymerase sliding clamp subunit B |
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| Protein accession | YP_001190152 |
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| Protein GI | 146302836 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
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| TIGRFAM ID | [TIGR00590] proliferating cell nuclear antigen (pcna) |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.574423 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.466331 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTCAGGG CAATATACGG CAGTTCTAGG GATTTCTACT ACATTGTGTC CTCCATTTCT
AAGATCAGTG ACGAGTTAAC CCTTAATTTC ACGGAGGAAG GAATAGGTAG CAAATACCTT
ACTGACGATA AGGTAATGAT GGGGGTAGTT GAGATAGGTA AAGATGCACT AGAGGAATAT
AGCATTGAGA AGCCGATTTC TGTAAAGCTC AACTTGGGAG AGTTGAAGAA GATACTTTCG
AAGATGAAGG GGAGGTCCAG TGTCGAGATA ACTGAAACTA ACGAAGGTAT CAGGATATCC
ATGAAGGATG AGAAAACGGG CACAAGGAGT AGTCTCTCAA TCAAGGCTGA GAAGGGGGAA
CCTCAAATTT TGAAGGAGCC TTCCGTAGCC CACTCTGTTA CCATGGGGAT CGGTGGTGAT
ATACTCTCGA TTCTGGTTGA CGAATCCATG CAGGTAGGGG AAGAAGTGGA AATAAAGGCC
GAGGATGATC ACGTGTCATT TGAAGTTGAA GAGGCCGGGA AAAAATATTC CGCCGTTCTA
AAAAACGGGA AACCGCTGAC GAAGCTTGAA ATAGAGAAAC AGGGAAGTTC CAGGTATAGT
TTAGCAATCC TGGAAAAGGT ATCAAGTGCA CTTTCCTTCT CCAAGGAAAT AGAGATAGGC
TTTGGGGCAG GGATTCCCAT GAAATTAACG GCCCCCCTTG AGAAGGGTGC GGGCATTAGA
TTTTGGGTAG CCCCAAGACT CTAA
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| Protein sequence | MFRAIYGSSR DFYYIVSSIS KISDELTLNF TEEGIGSKYL TDDKVMMGVV EIGKDALEEY
SIEKPISVKL NLGELKKILS KMKGRSSVEI TETNEGIRIS MKDEKTGTRS SLSIKAEKGE
PQILKEPSVA HSVTMGIGGD ILSILVDESM QVGEEVEIKA EDDHVSFEVE EAGKKYSAVL
KNGKPLTKLE IEKQGSSRYS LAILEKVSSA LSFSKEIEIG FGAGIPMKLT APLEKGAGIR
FWVAPRL
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