| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3970 |
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| Symbol | |
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| ID | 5110193 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4349925 |
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| End bp | 4351166 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640505233 |
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| Product | HK97 family phage major capsid protein |
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| Protein accession | YP_001189449 |
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| Protein GI | 146308984 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4653] Predicted phage phi-C31 gp36 major capsid-like protein |
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| TIGRFAM ID | [TIGR01554] phage major capsid protein, HK97 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.33538 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCATTC AAGCCAAGCG GGAGCAACGC AGCGCCCTGG CGAAAGAAAC CCGCGCCCTG
ATGGACGCGA ACACTGGCGA CAATTGGGGC GCTGAACAGC AGGCCAAATA CGATGGCCTG
GTGGCGCAGA TCGACCGCCT GGACGGCGAG ATCGAGCGCG CCCAGAAGCT GCTGGACATT
GAGGCCAAGC AGAAGCACAG CACCCGCAGT CGTGCCGAGC GCGATGGCAT CAGCGACGAT
GAGGCCGAAA GCCGCATTCT CGATGACAAA GCCATCTTCC GCGCCTGGGT GGCCGGCGGC
ATCGACAACC TTACTGCCGA GCAGCGCGAG ATCGTGGCCA AGCGCCGCGA GGAAGTGCGC
AACACCATGA GCACCACCAC CGGCAGCGAA GGTGGCTATC TGGTGCCGCG CGAGTTCTCG
GCCAATCTGC TGGAGGCCTT GAAGGACTTC GGCGGCATGC GCGCCGTGGC GCAGGTCATC
CGCACCGAAA CCGGCGCCGC CATGGACTGG CCGACCACCG ATGCCACTTC GGAAGAGGGC
GAGATCGTTG GTGAAAACGC CGAGGTTGAC AGCCAGGACG CCACCTTCGG CACCCTGGCA
CACGTGGTCT ACAAGTTCAG CTCCAAGGAC ATTGCTGTGC CCTTCGAGCT GCTGCAAGAC
AGCGCCATCG ACCTCGAAGC GCACATCAAC CAGCGCCTGA CCGAGCGCCT GGGTCGTATC
ACCAATCGTA TGTTCACCAC CGGCACCGGC ACCAACCAGC CGCACGGCGT GGTGACTGGC
GCGGCTGCCG GCAAGGTGGG CGCCACTGGT AAAGCTACCT CGGTCGGCTG GGAGGATCTG
GTTGACCTCG AACACAGCGT TGACCCGGCC TACCGCCGTT CCGGCAACTG CTCGCTGATG
TTCCACGACA CCACCTTGCG CGAGCTGAAG AAACTGAAAG ATGCCGACGG CCGCCCGATC
TGGCTGCCAG GTGTGGATGT GGCCGAGCCG GCTACCCTGA TCGGCATGCG TTACACCATC
AATCAGGACA TGCCGGTGAT GGCCGCCAAT GCCAAGTCGA TCCTGTTCGG TGACTTCAGC
CGCTACATCA TCCGCGACGT GATGCAGGTG CTGCTGTTCC GCATGACCGA CTCGGCCTAC
ACCCGCAAGG GCCAGGTTGG CTTCCTGGCG TTCATGCGCT CGGGCGGTCG CCTGATGGAT
GTGGGCGGCG CGCTGAAGTA CTACCAGAAC TCGGCGACCT GA
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| Protein sequence | MSIQAKREQR SALAKETRAL MDANTGDNWG AEQQAKYDGL VAQIDRLDGE IERAQKLLDI
EAKQKHSTRS RAERDGISDD EAESRILDDK AIFRAWVAGG IDNLTAEQRE IVAKRREEVR
NTMSTTTGSE GGYLVPREFS ANLLEALKDF GGMRAVAQVI RTETGAAMDW PTTDATSEEG
EIVGENAEVD SQDATFGTLA HVVYKFSSKD IAVPFELLQD SAIDLEAHIN QRLTERLGRI
TNRMFTTGTG TNQPHGVVTG AAAGKVGATG KATSVGWEDL VDLEHSVDPA YRRSGNCSLM
FHDTTLRELK KLKDADGRPI WLPGVDVAEP ATLIGMRYTI NQDMPVMAAN AKSILFGDFS
RYIIRDVMQV LLFRMTDSAY TRKGQVGFLA FMRSGGRLMD VGGALKYYQN SAT
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