Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3376 |
Symbol | |
ID | 5105848 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 3726923 |
End bp | 3728632 |
Gene Length | 1710 bp |
Protein Length | 569 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640504632 |
Product | exonuclease RecJ |
Protein accession | YP_001188860 |
Protein GI | 146308395 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 0.593595 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCATCG ATCTACGCCC CCTACCCGCA AGCCTGCCCG ACCTGGGCAA CCTGCCGCCG CTGTTGACCC GCCTCTACGC CGCCCGTGGC GTGCAGTGCG CCGAAGAATT GGACAAGGGC CTGGCGCGGT TGATCCCCTT TCAGCAGCTC AAGGGCATCG ATGCGGCGGT CGAACTGCTG GTCGAGGCGC TGCAGCGGCG CCAGCGCATC CTCATCGTCG GCGACTTCGA TGCCGATGGC GCCACCGCCA GCTCGGTCGG CGTGCTCGGC CTGCGCCAGC TCGGCGCGGC GCATGTCGAC TATCTGGTGC CGAACCGCTT CGAGTACGGC TATGGCCTGA CGCCGGAAAT CGTCGCCGTG GCGCTGCAGC GCCAGCCCGA TCTGTTGCTG ACCGTGGACA ACGGCATCTC CAGCGTCGAT GGCGTGGCCG CGGCCAAGGC CGCCGGGCTC AAGGTGCTGG TCACCGATCA CCACCTGCCG GGCCCGGAAC TGCCGGCGGC CGATGCCATC GTCAACCCCA ACCAGCCGGG CTGCGACTTC CCGAGCAAGG CCATGGCCGG TGTCGGGGTG ATGTTCTACG TGCTGCTGGC GCTGCGCGCG CGTCTGCGCG AGCTGGGCTG GTTCGCCAGC CGCCAGGAGC CGAACCTGGG CGAGCTGCTC GATCTGGTGG CCCTCGGCAG CGTCGCCGAC GTGGTGCCGC TGGATGCCAA CAACCGCATC CTGGTGCACC AGGGCCTCGC GCGTATTCGT GCCGGTCGGG CGCGGCCCGG GCTGCGCGCG ATACTCGAAG TGGCCGGGCG CGACCACCGG CGCATCACTT CCACCGATCT CGGTTTCATC CTCGGCCCGC GACTGAATGC GGCCGGGCGT CTGGACGACA TGAGCCTGGG CATCGAATGC CTGCTCTGCG ACGACGAAGC GCTGGCCCGC GACATGGCGG TGCAGCTCGA TCAGCTCAAC CAGGACCGCA AGGCCATCGA ACAGGGCATG CAGCGCGAGG CGCTGGCCCA GCTCAAGGAC CTGCCGCTGC AGGACATGCC GTTCGGCCTG TGCCTGTTCG AACCTGACTG GCACCAGGGA GTGATCGGCA TCCTCGCCTC GCGCCTGAAG GAACGCTATC ACCGCCCGGC CATCGCCTTT GCCGATGCCG GTGAGGGCAT GCTCAAGGGC TCGGCACGCT CGGTGCCGGG GCTGCATATC CGCGATGCGC TGGACGCCGT GGCGGCGCGC CATCCGGGGC TGATCAGCAA GTTCGGCGGG CACGCCATGG CCGCCGGCCT GTCGTTGCCG CAGGAAAACT TCGGCGCCTT CGCGGCTGCC TTCGACGCCG AGGTGCGCCG TCAGTTGTGC GAGGACGATT TGACCGGCCG CCTGCTGTCC GACGGCCAGC TCGACGCCAC CGAATTCCAC CTGGAACTGG CTCGCGCCCT GCGCAACGCC GGGCCCTGGG GCCAGCATTT CCCCGAGCCG CTGTTCCATG GCGTGTTCCA GATCGTGGGT CAGCGCATCG TCGGCGAGCG GCACCTGAAG CTGGTGCTCA AGACCGAGTG CGGCAGCGTG CAGCTCGACG GCATCGCCTT CAACATCGAC CGCGAGGTCT GGCCCAACCC GACGCTGCGC TGGGCCGAAG TGGCCTACAA GCTCGATCTC AACGAGTTTC GCGGCAACGA GAGCGTGCAG TTGATGGTGG CGCATATCGC GCCGCGCTGA
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Protein sequence | MRIDLRPLPA SLPDLGNLPP LLTRLYAARG VQCAEELDKG LARLIPFQQL KGIDAAVELL VEALQRRQRI LIVGDFDADG ATASSVGVLG LRQLGAAHVD YLVPNRFEYG YGLTPEIVAV ALQRQPDLLL TVDNGISSVD GVAAAKAAGL KVLVTDHHLP GPELPAADAI VNPNQPGCDF PSKAMAGVGV MFYVLLALRA RLRELGWFAS RQEPNLGELL DLVALGSVAD VVPLDANNRI LVHQGLARIR AGRARPGLRA ILEVAGRDHR RITSTDLGFI LGPRLNAAGR LDDMSLGIEC LLCDDEALAR DMAVQLDQLN QDRKAIEQGM QREALAQLKD LPLQDMPFGL CLFEPDWHQG VIGILASRLK ERYHRPAIAF ADAGEGMLKG SARSVPGLHI RDALDAVAAR HPGLISKFGG HAMAAGLSLP QENFGAFAAA FDAEVRRQLC EDDLTGRLLS DGQLDATEFH LELARALRNA GPWGQHFPEP LFHGVFQIVG QRIVGERHLK LVLKTECGSV QLDGIAFNID REVWPNPTLR WAEVAYKLDL NEFRGNESVQ LMVAHIAPR
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