Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3063 |
Symbol | |
ID | 5107543 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 3389944 |
End bp | 3390738 |
Gene Length | 795 bp |
Protein Length | 264 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640504320 |
Product | amino acid ABC transporter periplasmic protein |
Protein accession | YP_001188549 |
Protein GI | 146308084 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.898818 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 49 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCGCTT CCCTCCTGCT GCCGGCCTTG CTGGCGGTCA TGCTGCCGAC GCAGGCCGAG CCTAAGACAC TGCGCATCGG CACCGGCGAC TGGGCACCTT ATGTCGATCA GGGGCGCAGC GACGGCGGCG CCCTGGCCCG CCTGATCAGC GCGGTATTCG CCGAGTCCGG CTACCGCGTC GAGTACTTCT TCCATCCCTG GGATCGCAAT GTGCTGATGC TGCAGCAGGG CCAACTGCAC GCCATCATGC CCTACAGCTG CAGCCCCAGT CGGCTCAACT ACGGTGTCTG CAGCGACCCG CTGGTGCGCG GTGAGGTGGT GTTGTTCCAC CGTCGCGACA AGGCCTTCGA CTGGCAGCAT GTCGAGGACC TGCTGCGCTA CCGCATCGGC ACCACGCTCG GCTATTCCTA CGGCCCCGCA TTCGACGAGG CATTGCAGGC CGGAAGCCTG CAGGTGGAGC TCAGCGGCAA GGAGGAGACC AGCTTCCGCC TGCTGGAACT CGGGCGCATC GACCTGCACC CGCAGGACCG CGCGGTGGGC TATGCCATGC TGCGCCGTGT GTTCCCCGAT GGCGGCAGCC ATATCACCCA TCACCCGCGC TTTTTGAACA AGGAACCGTT GCGCCTGCTG TTTCGCAAGG ACGACCCCGC AGCGGCCGAG CTGCTGCATC AGTTCAATGC CGGCCTGCGC CGTTTCGCCG GGCGAGGCGA TCTGCAGAGC CTGCAGCAGG CGCTCAACTC CGGCAACGCC GACGATTGGC TGCCCAGCGC GCCGAGCCAG GCGGCGCGGG AGTGA
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Protein sequence | MLASLLLPAL LAVMLPTQAE PKTLRIGTGD WAPYVDQGRS DGGALARLIS AVFAESGYRV EYFFHPWDRN VLMLQQGQLH AIMPYSCSPS RLNYGVCSDP LVRGEVVLFH RRDKAFDWQH VEDLLRYRIG TTLGYSYGPA FDEALQAGSL QVELSGKEET SFRLLELGRI DLHPQDRAVG YAMLRRVFPD GGSHITHHPR FLNKEPLRLL FRKDDPAAAE LLHQFNAGLR RFAGRGDLQS LQQALNSGNA DDWLPSAPSQ AARE
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