Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2327 |
Symbol | |
ID | 5108562 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 2567442 |
End bp | 2568227 |
Gene Length | 786 bp |
Protein Length | 261 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640503569 |
Product | virulence protein, SciE type |
Protein accession | YP_001187817 |
Protein GI | 146307352 |
COG category | [R] General function prediction only |
COG ID | [COG4455] Protein of avirulence locus involved in temperature-dependent protein secretion |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.0365801 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGCCG ATGAACTGCT ACGTGCCGGC AAGCTCGATG AGGCGCTCAA CGCGCTGCAG GATCAGGTGC GGGCGCAGCC GTCCAATGCG GCGTTGCGCG TGTTCCTGTT CCAGCTGCTG GCGGTGCTCG GGCAATGGAG CCGCGCGCAG AACCAGTTGA AGGTGGCAGG CGAGCTGGAC GCGTCCACCC TGGCCATGGT GCAGACCTAC CGTTCGGCGC TGGAATGCGA GGCGCTGCGT GCCGAAGTAT TCGCCGGACG CCTGACACCG GTGCTACTGG GCGAACCCGC GCCCTGGCTC GCGCCCCTGA TCCAGGCGCT GCAAGTGGAT GCGCAGGGCC ATGCCGAGGC AGCACAGGCG CTGCGCGATC AGGCCTTCGA AGCCGCACCG GCGGTACCTG GCGAACTCAA TGGCGAAGCC TTCGCCTGGT GCGCCGATGC CGACCCGCGA CTCGGCCCGG TGCTGGAGCT GATCGTCAAT GGCCGCTACG TCTGGCTGCC GATGGAGAAC ATCGCCAGCC TGACGTGCGA GGCGCCCAGC GATCTGCGCG ACCTGGTGTG GATGCCCGCC GAGCTGACCC TGCGAAACGG CGGCAGCACC GTGGCGCTGA TTCCCAGCCG TTATCCCGAC ACCGTCCAAC TCGGCGATGA CGCGGCGCGC CTGGCACGCA AGCTGGACTG GCTCGACAAC GGCCTGCCCA TCGGTCAGCG GCTGTTCGCC ACCGACCTGG GCGATACCGC GTTGTTCGAG CTGCGCAGCC TCACCTTCGG CGCAGGAGCA GCCTGA
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Protein sequence | MNADELLRAG KLDEALNALQ DQVRAQPSNA ALRVFLFQLL AVLGQWSRAQ NQLKVAGELD ASTLAMVQTY RSALECEALR AEVFAGRLTP VLLGEPAPWL APLIQALQVD AQGHAEAAQA LRDQAFEAAP AVPGELNGEA FAWCADADPR LGPVLELIVN GRYVWLPMEN IASLTCEAPS DLRDLVWMPA ELTLRNGGST VALIPSRYPD TVQLGDDAAR LARKLDWLDN GLPIGQRLFA TDLGDTALFE LRSLTFGAGA A
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