Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1563 |
Symbol | |
ID | 5109221 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 1722308 |
End bp | 1722952 |
Gene Length | 645 bp |
Protein Length | 214 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640502791 |
Product | two component LuxR family transcriptional regulator |
Protein accession | YP_001187059 |
Protein GI | 146306594 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.241819 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCTGCC GGGTATTGCT GGCCGACGAT CACGCGGTGA TTCGCGCCGG CGTACGCGCG ATGATCCAGG ACATCGACGA CTACACCATC GTCGGCGAGG CCGAGGACGG CAAGGAAACC GTGGAGCTGG CCCGCGAGCT GGAGCCGGAC ATCATCCTGC TGGACATCTC CATGAAGCGG GTCAGCGGCC TGGAAGCCCT GCAGGTACTG AACCGTCACT CGCCGGACTG CAAGGTGCTG ATCCTGTCCA TGCACACCGG CCCGGAAGTG GTACTCGAAG CCCTGCAAAA AGGTGCCCAC GGCTACCTGC TCAAGGACGC CGCCGCCTTC GAGCTGCGCC TGGCGCTTGA AGCGGTACGC CGCGGCGACC GTTATCTGAG CTCGGCCATC GTGCAACCGG TGATCGAGCA GGCCGTCTCC AAGGTCAATG CCCATGCCGA GCATGGGCTG ACTCAACGCC AGCTGGAAAT CCTGCGCCTG ATCACCCGCG GCGAATCGAC CCGTTCCATC GCCAATGGCC TGGGTCTGAG CGTGAAGACC GTGGAGGCGC ACCGCGCGCA GATCATGAAG CGCCTGCAGA TCCATGACGT GCCGAGCCTG GTGCTCTACG CCGTGCGCGA AGGCATCATC AGCCCGGACG ACTGA
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Protein sequence | MTCRVLLADD HAVIRAGVRA MIQDIDDYTI VGEAEDGKET VELARELEPD IILLDISMKR VSGLEALQVL NRHSPDCKVL ILSMHTGPEV VLEALQKGAH GYLLKDAAAF ELRLALEAVR RGDRYLSSAI VQPVIEQAVS KVNAHAEHGL TQRQLEILRL ITRGESTRSI ANGLGLSVKT VEAHRAQIMK RLQIHDVPSL VLYAVREGII SPDD
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