Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1378 |
Symbol | |
ID | 5109431 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 1544381 |
End bp | 1545262 |
Gene Length | 882 bp |
Protein Length | 293 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640502607 |
Product | AraC family transcriptional regulator |
Protein accession | YP_001186875 |
Protein GI | 146306410 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.230612 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 0.324624 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGGCCTGC GGGTGGAAAC CTCCAACTGG CCGCTGCCAC TCGGCGGGCA GCGCTTCATC ACGCCACCGC GCCTGCGCCG CCTGCTGGTA CGCCATCCGC TGAGCTCGGG CTGCTATCCC CTGGCCATGG GTTTTTACCC TGACGCGGCC GGACACCAGA TGCGGCGCCT GCAGCCGGAC GATCACCTGC TGATCTATTG CCGCTCCGGC AGGGGCTGGC TGGACGCGAC GGATGGACGA TTCGAGGTTG CTGCTGGCGA TCTGCTGCTG CTGCCCAAGG ACGTGCCGCA TGCCTATGGC GCCGATGGGC ACAGCCCCTG GACGATCTAT TGGGTGCACT TCGACGGCAG CCTAAGCGAA GACTTCCTGC GTCTGCTGGG CGCGCAGACG CTGCGGCGCA TCGGTGTGCA GCCGCGTTTG CTCGGCGACT TCGAGGCGCT GCTGGGTCTG CAGCGGCAGG GCCTCAACGC CTTGCCCTTC ATCCATGCCG CGCACCGCCT GCAGGCGATG CTCAGCTCCC TGGCGGTGCT GCCGGCGCGG GTCAGTCTGA AATCCGGGCG GGTGCTGGAT ATCGAAGCGG TGCAGGCGGT GATGCGCGCC CACCTGCACG GCAACCTCAA CCTCGACGAA CTGGCGGCGC AGTTCAAGCT CTCGCGCTTT CACTTCGCCA AGACCTACCG CGCGCTGACC GGCCATGCGC CGATCCAGGA CTTCATCCAG CTGAAGATGG CGCTGGCCTG CCGTCTGCTC GACCGTGGCG ATATCGAGGT GCGTCAGGTC GCCGAGCAGC TGGGTTACGA GGACCCCTAT TACTTCTCGC GGCTGTTTCG CAAGGTGGTG GGCATGGCGC CCAGTCATTA CCGGGCGCTG CATCAGGGCT AG
|
Protein sequence | MGLRVETSNW PLPLGGQRFI TPPRLRRLLV RHPLSSGCYP LAMGFYPDAA GHQMRRLQPD DHLLIYCRSG RGWLDATDGR FEVAAGDLLL LPKDVPHAYG ADGHSPWTIY WVHFDGSLSE DFLRLLGAQT LRRIGVQPRL LGDFEALLGL QRQGLNALPF IHAAHRLQAM LSSLAVLPAR VSLKSGRVLD IEAVQAVMRA HLHGNLNLDE LAAQFKLSRF HFAKTYRALT GHAPIQDFIQ LKMALACRLL DRGDIEVRQV AEQLGYEDPY YFSRLFRKVV GMAPSHYRAL HQG
|
| |