| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1320 |
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| Symbol | |
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| ID | 5109136 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1478158 |
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| End bp | 1479912 |
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| Gene Length | 1755 bp |
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| Protein Length | 584 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640502548 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001186817 |
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| Protein GI | 146306352 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00692574 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGTCA CCGAGCAGTT GAGCGCATTG GGGAACATCC TCGCTCACGG CGACATCAGC
AGCCTGTTCC AGCCCATCGT CTCGCTTTCC GAACAGCGCA TCCTGGGCTA TGAGGCGCTT
ACCCGCGGCC CCTCCAACAG CCCGCTGCAT TCGCCGCTGA CGCTGTTCGC CGTCGCCCGC
CATGCCGGCC GCCTGAGCGA ACTGGAGATG GCCTGCCGCA AGAGCGCCTG CAAGGCCTTC
AGCGCCCAGG GTCTGGACGG CAAGCTGTTT CTCAACGTCT CGCCCGAATC GCTGCTCGAC
CCCAGCCACC AGCCGGGGCA AACCCTGAAA CTGCTGCAGG CCTTCGGCAT TCCGCCAAGC
CAGGTGGTGA TCGAACTCAC CGAGCAGTCG CCCACCGAAG ACTTCGCCCT GCTCGATACC
GCCCTGCACC ACTATCGCGC CATGGGCTTT TCCATCGCCC TGGACGACCT TGGCGCCGGT
TATTCCAGCC TGCGCCTGTG GTCGGAACTG CGCCCGGACT ACGTGAAGAT CGACCGGCAT
TTCATCGATG GCATCCATCA GGACGCGGTC AAACGCGAGT TCGTCGGCTC CATCCTGAAG
ATGGCAGCCG CTTCGCGCGC CCAGGTCATA GCCGAAGGCA TCGAGCTGGG CGAGGAACTG
ACGGTACTGG CCGAAATGGG CGTGGATCTG GTGCAGGGCT ACCTGCTCAG CCGCCCGCAG
GAAAAGCCGC CACGTGACGC CCGGCAGTTG CTGCCACGGT TGCAGAGCGG CCAGAGCGGC
CTCGCCGAAG ACAGCCACGA CCTGAGTGCC CTGCTCAGCG AGCAGCCGGC CGTCGACCAG
CACACCGCCA TCGCCGAGGT GCTGGAGGTG TTTCGCGCTC AAGCCAATCT CAATTCCCTG
GCGGTACTGG ATGAACAGCG TCAGCCGGTC GGCATCGTCC ACCGCCACTC GCTCTCGGAG
GCGCTGCTCA AGCCCTTCGC CACCGACCTG TTCGCGCGCA AGCCGATCAG CCGGCTGATG
AGCCAGGACT TTCTCGCCGT GGAGCTCACC CAGTCGCTGC AGAAGGTCAG CCGCCTGCTG
ACCAGCCGCG CGCGCCAGCG TATCGAGGAA GATTTCATCA TCATCCAGAG CGGCCGCTAT
CTGGGCCTGG GTCGGGTGAT CGACGTGCTC AAGCTGATCA CCGAGCAGAA GCTGCAACAG
GCACGCCATG CCAATCCGCT CACCCTGCTG CCCGGCAACG TGCCCATCCA GCAGTGTCTG
GCGCGCCTGC TACAGCAGGG CCGCCAGGCC GCGGTGTGCT ACGTCGACAT CGACAGCTTC
AAACCCTTCA ACGACCTGTA CGGCTATGCC AAGGGCGACG AGGTGCTGTT GTGCCTGGCC
CAGTGCCTGA ACGAGAGGGT CGATCCGGCA CGCGATTTCG TCGGCCATAT CGGCGGGGAT
GACTTCATGC TGGTGCTCGG CTCGGCCGAC TGGCGAGAAA AGCTCGGGCG TCTGATCGAG
GACTTCCAGA GCCAGTGCCG GCGCTTCTAC CGGGAAGAGC ATCTGCAAGC CGGCTGCTTC
ATCGCCCACA ACCGCCAGGG CCAGCGCCAG GAGTATGCGC TGCTCTCGCT GTCGATCGGC
GTGGTGCATC TGCAGGGCGA AGACTGCGCG CAACTGGACG CCGCACGCCT GGCCGAGCTG
GCGTCGGACG CCAAGCGTCA GGCCAAGTCG GTGCCCGGCT ACAGCCTGCA CATCATTCCG
GGCTCAGCGG GCTGA
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| Protein sequence | MTVTEQLSAL GNILAHGDIS SLFQPIVSLS EQRILGYEAL TRGPSNSPLH SPLTLFAVAR
HAGRLSELEM ACRKSACKAF SAQGLDGKLF LNVSPESLLD PSHQPGQTLK LLQAFGIPPS
QVVIELTEQS PTEDFALLDT ALHHYRAMGF SIALDDLGAG YSSLRLWSEL RPDYVKIDRH
FIDGIHQDAV KREFVGSILK MAAASRAQVI AEGIELGEEL TVLAEMGVDL VQGYLLSRPQ
EKPPRDARQL LPRLQSGQSG LAEDSHDLSA LLSEQPAVDQ HTAIAEVLEV FRAQANLNSL
AVLDEQRQPV GIVHRHSLSE ALLKPFATDL FARKPISRLM SQDFLAVELT QSLQKVSRLL
TSRARQRIEE DFIIIQSGRY LGLGRVIDVL KLITEQKLQQ ARHANPLTLL PGNVPIQQCL
ARLLQQGRQA AVCYVDIDSF KPFNDLYGYA KGDEVLLCLA QCLNERVDPA RDFVGHIGGD
DFMLVLGSAD WREKLGRLIE DFQSQCRRFY REEHLQAGCF IAHNRQGQRQ EYALLSLSIG
VVHLQGEDCA QLDAARLAEL ASDAKRQAKS VPGYSLHIIP GSAG
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