Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1141 |
Symbol | |
ID | 5108114 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 1285548 |
End bp | 1286441 |
Gene Length | 894 bp |
Protein Length | 297 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640502365 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001186640 |
Protein GI | 146306175 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 0.387698 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGTCA AGCAACTACG CGCCTTTCTC GCCGTGGCGC AAAGCCTGAG CTTCGCCCAG GCCTGCGAGC GCCTGCATCT GTCGCAGCCG GCACTGAGCC TGGCGATCAA GAACCTGGAG CAATCGCTCG GCGGTCAGTT GCTGGTGCGC ACCACCCGCA GCGTGGCGCT GACGCCGGAG GGCGAGACGC TGTTGCCGAT CGCCGTGCGT CTGCTCGCCG ACTGGGACAA CGCCGAGGAC CTGCTGCGCC AGCACTTCAC CCTGCAGATG GGCAAGGTGG CGGTGGCGGC CATGCCGTCG TTCGCCGGCA ACCGACTGCC GGCGGCGTTG CGTGCTTTTC GCGACGCCTA CCCGCGGGTC AACGTGGCGG TGCACGACGT GATCAACGAA CAGGTGATGG AAATGGTGCG CGACGGCCGC GTCGAGCTGG GCATCGCCTT CGAGCCGGCA ACCCTCGATG GTCTGCAGTT CACCCCGCTG TACGAGGATC GTTTCGTCGC CGTGGTGCCG GCCGACAGCG AGCTGGCCGG GCGCGAGGCC CTGAGCTGGG TGGATCTGCT CGACCGCCCC TTCATCACCC TGCAGCGGCC CTCGGCAGTG CGCCTGCTGC TGGAAGACAG CGTGATCGCC AGCCACGGCA GGCTGCCGGT GGCGTTCGAG AGTCATCAGC TGGTCACGGT CGGGCGCATG GTCGCCGAAG GCCTCGGCGT CAGTGCGGTG CCGCAGCTGT GTCGGCAGCA GATGGAGGAG TTGGGTGCGC GCTGTCTGCC GCTGGGCGAG CCGCAGGTTA CGCGGCGTGT CGGTCTGCTG CACCAGGCCG GGCGCCAGCT GTCCAGCGCG GCGCAGGCGT TGAGCGACAC GCTGTTACGT CAGGCAGAGC GTTATCAGGC GTAG
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Protein sequence | MTVKQLRAFL AVAQSLSFAQ ACERLHLSQP ALSLAIKNLE QSLGGQLLVR TTRSVALTPE GETLLPIAVR LLADWDNAED LLRQHFTLQM GKVAVAAMPS FAGNRLPAAL RAFRDAYPRV NVAVHDVINE QVMEMVRDGR VELGIAFEPA TLDGLQFTPL YEDRFVAVVP ADSELAGREA LSWVDLLDRP FITLQRPSAV RLLLEDSVIA SHGRLPVAFE SHQLVTVGRM VAEGLGVSAV PQLCRQQMEE LGARCLPLGE PQVTRRVGLL HQAGRQLSSA AQALSDTLLR QAERYQA
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