| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0337 |
|---|
| Symbol | |
|---|
| ID | 5110306 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 342811 |
|---|
| End bp | 343917 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640501553 |
|---|
| Product | agmatine deiminase |
|---|
| Protein accession | YP_001185842 |
|---|
| Protein GI | 146305377 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2957] Peptidylarginine deiminase and related enzymes |
|---|
| TIGRFAM ID | [TIGR03380] agmatine deiminase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACCC TGACTACCAC CCCACGCGCC GATGGTTTCC ATATGCCCGC CGAGTGGGCA
CCGCACAGCC AGACCTGGAT GGTCTGGCCG GAGCGCCCGG ACAACTGGCG CAACGGCGGC
AAGCCGGCGC AGGCGGCCTT CACCGCCGTG GCCAAGGCCA TCGCCCAGTT CGAGCCGGTG
ACCGTGTGCG TCTCCGCCGC GCAGTACGAA AACGCCCGTG CCCGCCTGGA CGACGACAAC
ATCCGCCTGG TGGAAATCAC CACCGACGAT GCCTGGGTGC GGGACACCGG CCCGACCTTC
GTGATCAACG GCCGCGGCGA GGTGCGCGGC GTGGATTGGA CCTTCAACGC CTGGGGCGGC
TTCGACGGCG GTTTGTACTG GCCGTGGCAG CGCGACGATC AGGTGGCGCG CAAGATCCTC
GATATCGAAG GCTGCAAGCG CTATCGCACC GAGGGTTTCG TCCTCGAAGG CGGCTCGATC
CACGTCGACG GCGAAGGCAC CCTGATCACC ACCGAAGAAT GCCTGCTGAA CAGGAACCGC
AACCCGCACC TGTCGCGTGA AGAGATCGAG GCCGTGCTGC GCGAGCACCT GGCCATCGAC
ACGGTGATCT GGCTGCCCGA GGGCCTGTAC AACGACGAGA CCGACGGCCA CGTCGACAAC
TTCTGCTGCT ATGTGCGCCC GGGCGAGGTG CTGCTGGCCT GGACCGACGA TCAGAACGAT
CCCAACTACC CGCGCTGCCA GGCCGCCATG CGTGTGCTGG AGAGCGTGCG AGATGCCAAG
GGTCGCCAGC TGATCGTGCA CAAGATGCCG ATCCCCGGCC CGATCCACGC CAGCGAAGAG
GAATGCGCCG GCGTCGACGC CGCCGAAGGC AGCCAGGAGC GTAGCCCTGC GGTGCGCCTG
GCCGGCTCCT ACGTCAACTT CCTGATCGTC AACGGCGGCA TCGTCGCGCC GAGCTTCGAT
GACCCGAAGG ACGCAGAGGC CCGCGCCATC CTGCAACAGG TCTTCCCGGA GCATCGCGTG
GTGATGGTGC CCGGCCGCGA GATCCTCCTG GGCGGCGGCA ATATCCACTG CATCACCCAG
CAGCAGCCAG CCCCGCAGGG TGCCTGA
|
|---|
| Protein sequence | MTTLTTTPRA DGFHMPAEWA PHSQTWMVWP ERPDNWRNGG KPAQAAFTAV AKAIAQFEPV
TVCVSAAQYE NARARLDDDN IRLVEITTDD AWVRDTGPTF VINGRGEVRG VDWTFNAWGG
FDGGLYWPWQ RDDQVARKIL DIEGCKRYRT EGFVLEGGSI HVDGEGTLIT TEECLLNRNR
NPHLSREEIE AVLREHLAID TVIWLPEGLY NDETDGHVDN FCCYVRPGEV LLAWTDDQND
PNYPRCQAAM RVLESVRDAK GRQLIVHKMP IPGPIHASEE ECAGVDAAEG SQERSPAVRL
AGSYVNFLIV NGGIVAPSFD DPKDAEARAI LQQVFPEHRV VMVPGREILL GGGNIHCITQ
QQPAPQGA
|
|---|
| |