| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0046 |
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| Symbol | |
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| ID | 5106720 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 43774 |
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| End bp | 44427 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640501262 |
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| Product | type III secretion system protein |
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| Protein accession | YP_001185552 |
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| Protein GI | 146305087 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4790] Type III secretory pathway, component EscR |
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| TIGRFAM ID | [TIGR01102] type III secretion apparatus protein, YscR/HrcR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 61 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATTCTGG ACGGAATGAA CCCCATCATG CTGGCGCTGT TCCTTGGCGC CCTGTCGTTG
ATTCCCTTCC TGCTCATCGT CTGCACGGCA TTTCTCAAGA TCGCCATGAC GCTGATGATC
ACCCGTAACG CCATTGGCGT GCAGCAGGTT CCACCGAACA TGGCGATCTA CGGTATCGCC
CTGGCGGCGA CCATGTTCGT GATGGCGCCG GTTGCCTACG AAATCCAGAA CCGACTCAGT
GACAACCCCC TGGACCTGTC GTCCACGGAC AGTCTCCAGG CCAGTGCCGG CAACGTGGTG
GAGCCGTTGC AGGACTTCAT GGTGAACAAC ACCGACCCGG ACATCGCCAC GCATCTTCTG
GAAAACACCC AGCGCATGTG GCCCAGGGAA ATGTCCGAGA AGGCCAGCAA AAGCGACCTG
CTGCTGGCGA TTCCGGCGTT CGTGCTGTCC GAGCTGCAGG CTGCGTTTCA GATCGGTTTT
CTGATCTACA TCCCGTTCAT CGTGATCGAC CTGATCATTT CCAATCTGCT GCTGGCGCTG
GGCATGCAGA TGGTGTCGCC GATGACCATC TCGCTGCCGC TGAAGCTGTT GCTGTTCGTC
CTGGTGGACG GCTGGACGCG GCTGCTCAAC AGCCTCTTCT ACTCCTATAT GTGA
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| Protein sequence | MILDGMNPIM LALFLGALSL IPFLLIVCTA FLKIAMTLMI TRNAIGVQQV PPNMAIYGIA
LAATMFVMAP VAYEIQNRLS DNPLDLSSTD SLQASAGNVV EPLQDFMVNN TDPDIATHLL
ENTQRMWPRE MSEKASKSDL LLAIPAFVLS ELQAAFQIGF LIYIPFIVID LIISNLLLAL
GMQMVSPMTI SLPLKLLLFV LVDGWTRLLN SLFYSYM
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