| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0032 |
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| Symbol | |
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| ID | 5106707 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 30305 |
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| End bp | 31210 |
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| Gene Length | 906 bp |
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| Protein Length | 301 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640501249 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_001185539 |
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| Protein GI | 146305074 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 61 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTGAGT TCGATTGGCC GGATGCTTTT TGGATGAATG ACGGTGGTTT ACCCAATCTC
GAAGTCGTGG CAAGCAGCAT CTCCGAACTG AATATCGATG TCCTGCTTAC CGGCGAAACC
GGTTCTGGCA AGGACACACT TGCGCAATAC CTGCACAAGC TGTCCGGACG CAAAGGCCCA
TTCGTGGCAA TGAACTGCGC AGCAATTCCG GAATCTCTGT TCGAGAGCGA GCTGTTCGGT
GTGACCAGCG GCGCCTACAC CGGCGCTGAT CACTCCAGAA TGGGCTATGT GGAGGCCGCC
CAGGGCGGCA CGCTGTACCT CGACGAAATC GACAGCATGC CCGCGTTCCT GCAAGCCAAG
CTCCTGCGGG TGCTGGAGAC CCGCCAGATC GAACGCCTGG GGTCGACCAC GCCAGTCCCC
TTGGATATCT GCGTCGTGGC CTCCGCGCAA CGCTCGTTGG ACGCCTTGGT CGAGCAGGGC
GAGTTTCGCC GGGATCTCTA CTTCCGCCTC AATGTCCTGA CGCTGAGGCT GCCCGCGCTG
AGACAGAAGC GCGAGTGGAT CATCCCGATG TTCGAGCGCT TCGCATTCGA GGCCTCGCAG
GACATGGACA CGGCGCTACC GGTCATCGAC CCTGCCATCG AACATGTACT GCTGAACCAT
GACTGGCCCG GTAATCTCCG CGAGCTCAAA TCTGCGGCGA AGCGCCACGT GCTGGGTATA
AACCTTTTGG GTATAGAAGC CGAACAGCCC ATCGAGTGCG ATCTCAAGTG CCAACTCCGG
CTGATCGAAA AGGTGTTGAT CCAGGAATCC CTGCAGCGCC ACGAACATTG CATCGAGGCC
GTGCTCCACG AGTTGGACAT TCCCCGGCGC ACGCTCTATC ACCGCATGAA AGAGCTCGAT
GTCTGA
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| Protein sequence | MSEFDWPDAF WMNDGGLPNL EVVASSISEL NIDVLLTGET GSGKDTLAQY LHKLSGRKGP
FVAMNCAAIP ESLFESELFG VTSGAYTGAD HSRMGYVEAA QGGTLYLDEI DSMPAFLQAK
LLRVLETRQI ERLGSTTPVP LDICVVASAQ RSLDALVEQG EFRRDLYFRL NVLTLRLPAL
RQKREWIIPM FERFAFEASQ DMDTALPVID PAIEHVLLNH DWPGNLRELK SAAKRHVLGI
NLLGIEAEQP IECDLKCQLR LIEKVLIQES LQRHEHCIEA VLHELDIPRR TLYHRMKELD
V
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