More than 300 homologs were found in PanDaTox collection
for query gene Pmen_0032 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009439  Pmen_0032  sigma-54 dependent trancsriptional regulator  100 
 
 
301 aa  619  1e-176  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1380  type III transcriptional regulator HrpS  67.94 
 
 
302 aa  400  9.999999999999999e-111  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1191  type III transcriptional regulator HrpS  66.2 
 
 
302 aa  389  1e-107  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0970395 
 
 
-
 
NC_007005  Psyr_1190  type III transcriptional regulator HrpR  62.32 
 
 
314 aa  357  9.999999999999999e-98  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.793619  normal  0.0975249 
 
 
-
 
NC_004578  PSPTO_1379  type III transcriptional regulator HrpR  62.41 
 
 
314 aa  351  8e-96  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.659912  n/a   
 
 
-
 
NC_009439  Pmen_0033  sigma-54 dependent trancsriptional regulator  55.48 
 
 
309 aa  321  9.999999999999999e-87  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1896  sigma54 specific transcriptional regulator, Fis family  54.14 
 
 
325 aa  318  6e-86  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2201  sigma54 specific transcriptional regulator, Fis family  53.5 
 
 
352 aa  303  3.0000000000000004e-81  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_1419  two component, sigma54 specific, transcriptional regulator, Fis family  49.1 
 
 
451 aa  259  3e-68  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.895196 
 
 
-
 
NC_010172  Mext_1258  sigma-54 factor interaction domain-containing protein  49.1 
 
 
451 aa  259  3e-68  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.438925 
 
 
-
 
NC_009654  Mmwyl1_1002  two component, sigma54 specific, Fis family transcriptional regulator  43.92 
 
 
455 aa  257  1e-67  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1208  two component, sigma54 specific, transcriptional regulator, Fis family  48.39 
 
 
458 aa  254  2.0000000000000002e-66  Methylobacterium populi BJ001  Bacteria  normal  0.320827  normal  0.373488 
 
 
-
 
NC_008345  Sfri_2719  two component, sigma54 specific, transcriptional regulator, Fis family protein  47.5 
 
 
457 aa  251  1e-65  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1722  two component, sigma54 specific, Fis family transcriptional regulator  44.78 
 
 
455 aa  249  4e-65  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.0267167 
 
 
-
 
NC_007963  Csal_2407  two component, sigma54 specific, Fis family transcriptional regulator  46.28 
 
 
461 aa  248  1e-64  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_4048  two component, sigma54 specific, Fis family transcriptional regulator  46.01 
 
 
459 aa  246  2e-64  Xanthobacter autotrophicus Py2  Bacteria  normal  0.650008  normal  0.353812 
 
 
-
 
NC_003296  RSp0009  response regulator of the C4-dicarboxylate transport two-component regulatory system transcription regulator protein  45.2 
 
 
454 aa  246  4e-64  Ralstonia solanacearum GMI1000  Bacteria  normal  0.313287  normal 
 
 
-
 
NC_012857  Rpic12D_3902  two component, sigma54 specific, transcriptional regulator, Fis family  44.91 
 
 
452 aa  244  9.999999999999999e-64  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_3789  two component, sigma54 specific, transcriptional regulator, Fis family  44.91 
 
 
452 aa  244  9.999999999999999e-64  Ralstonia pickettii 12J  Bacteria  normal  normal  0.146089 
 
 
-
 
NC_009092  Shew_1442  two component, sigma54 specific, Fis family transcriptional regulator  43.64 
 
 
455 aa  243  1.9999999999999999e-63  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_2912  two component, sigma54 specific, Fis family transcriptional regulator  43.69 
 
 
455 aa  243  1.9999999999999999e-63  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_3936  two component, sigma54 specific, Fis family transcriptional regulator  42.96 
 
 
441 aa  243  3e-63  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc0332  C4-dicarboxylate transport response regulator transcription regulator protein  43.6 
 
 
438 aa  243  3e-63  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3478  two component, sigma54 specific, Fis family transcriptional regulator  44.67 
 
 
450 aa  243  3.9999999999999997e-63  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_0188  two component, sigma54 specific, transcriptional regulator, Fis family  45.26 
 
 
438 aa  242  6e-63  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A0275  helix-turn-helix, Fis-type  44.24 
 
 
441 aa  242  6e-63  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_1548  two component, sigma54 specific, transcriptional regulator, Fis family  43.58 
 
 
459 aa  241  1e-62  Shewanella baltica OS223  Bacteria  normal  0.816634  normal 
 
 
-
 
NC_009997  Sbal195_2953  two component, sigma54 specific, Fis family transcriptional regulator  43.58 
 
 
459 aa  241  1e-62  Shewanella baltica OS195  Bacteria  normal  normal  0.0277282 
 
 
-
 
NC_012856  Rpic12D_0194  two component, sigma54 specific, transcriptional regulator, Fis family  45 
 
 
438 aa  241  1e-62  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0392315 
 
 
-
 
NC_009665  Shew185_2828  two component, sigma54 specific, Fis family transcriptional regulator  43.58 
 
 
459 aa  241  1e-62  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2810  two component, sigma54 specific, Fis family transcriptional regulator  43.58 
 
 
459 aa  240  2e-62  Shewanella baltica OS155  Bacteria  normal  0.776829  n/a   
 
 
-
 
NC_008322  Shewmr7_1424  two component, sigma54 specific, Fis family transcriptional regulator  46.01 
 
 
459 aa  240  2e-62  Shewanella sp. MR-7  Bacteria  normal  normal  0.545985 
 
 
-
 
NC_004347  SO_3138  C4-dicarboxylate transport transcriptional regulatory protein  43.34 
 
 
459 aa  239  2.9999999999999997e-62  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010086  Bmul_3388  two component, sigma54 specific, Fis family transcriptional regulator  43.37 
 
 
453 aa  239  2.9999999999999997e-62  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2504  two component, sigma54 specific, Fis family transcriptional regulator  46.43 
 
 
459 aa  240  2.9999999999999997e-62  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1359  two component, sigma54 specific, Fis family transcriptional regulator  46.01 
 
 
459 aa  239  2.9999999999999997e-62  Shewanella sp. MR-4  Bacteria  normal  normal  0.0913399 
 
 
-
 
NC_008577  Shewana3_1412  two component, sigma54 specific, Fis family transcriptional regulator  46.43 
 
 
459 aa  239  2.9999999999999997e-62  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_4410  two component, sigma54 specific, Fis family transcriptional regulator  45.94 
 
 
444 aa  238  1e-61  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_4292  sigma-54 dependent transcriptional regulator/response regulator  45.14 
 
 
444 aa  237  2e-61  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4458  two component, sigma-54 specific, Fis family transcriptional regulator  46.67 
 
 
442 aa  237  2e-61  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.741172  normal 
 
 
-
 
NC_010084  Bmul_0432  two component, sigma54 specific, Fis family transcriptional regulator  44.01 
 
 
450 aa  237  2e-61  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_1401  two component, sigma54 specific, transcriptional regulator, Fis family  45.58 
 
 
444 aa  236  3e-61  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_0230  Fis family transcriptional regulator  42.45 
 
 
444 aa  236  3e-61  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_2148  helix-turn-helix, Fis-type  45.26 
 
 
442 aa  236  4e-61  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.383237 
 
 
-
 
NC_010322  PputGB1_4346  two component, sigma54 specific, Fis family transcriptional regulator  41.75 
 
 
442 aa  236  5.0000000000000005e-61  Pseudomonas putida GB-1  Bacteria  normal  0.788839  normal 
 
 
-
 
NC_013456  VEA_004047  C4-dicarboxylate transport transcriptional regulatory protein  43.77 
 
 
445 aa  235  6e-61  Vibrio sp. Ex25  Bacteria  normal  0.114732  n/a   
 
 
-
 
NC_010515  Bcenmc03_4926  two component, sigma54 specific, Fis family transcriptional regulator  43.01 
 
 
453 aa  235  6e-61  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B0306  two component, sigma54 specific, Fis family transcriptional regulator  43.37 
 
 
453 aa  235  6e-61  Burkholderia sp. 383  Bacteria  normal  0.794109  normal 
 
 
-
 
NC_007643  Rru_A1435  two component, sigma54 specific, Fis family transcriptional regulator  44.98 
 
 
445 aa  235  7e-61  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0274365  n/a   
 
 
-
 
NC_009512  Pput_4322  two component, sigma54 specific, Fis family transcriptional regulator  45.23 
 
 
444 aa  235  9e-61  Pseudomonas putida F1  Bacteria  normal  0.713581  normal 
 
 
-
 
NC_008700  Sama_2213  response regulator receiver protein  44.3 
 
 
461 aa  234  9e-61  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_5669  two component, sigma54 specific, Fis family transcriptional regulator  42.5 
 
 
454 aa  234  1.0000000000000001e-60  Burkholderia phymatum STM815  Bacteria  normal  0.946519  normal 
 
 
-
 
NC_010002  Daci_4293  two component, sigma54 specific, Fis family transcriptional regulator  42.23 
 
 
448 aa  234  1.0000000000000001e-60  Delftia acidovorans SPH-1  Bacteria  normal  0.475037  normal 
 
 
-
 
NC_008061  Bcen_3024  two component, sigma54 specific, Fis family transcriptional regulator  43.01 
 
 
453 aa  233  2.0000000000000002e-60  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5342  two component, sigma54 specific, Fis family transcriptional regulator  43.01 
 
 
453 aa  233  2.0000000000000002e-60  Burkholderia cenocepacia HI2424  Bacteria  normal  0.71249  normal  0.508922 
 
 
-
 
NC_009512  Pput_1107  two component, sigma54 specific, Fis family transcriptional regulator  41.75 
 
 
442 aa  233  3e-60  Pseudomonas putida F1  Bacteria  normal  normal  0.248973 
 
 
-
 
NC_007510  Bcep18194_A6213  two component, sigma54 specific, Fis family transcriptional regulator  43.77 
 
 
451 aa  233  3e-60  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_1095  two component, sigma54 specific, Fis family transcriptional regulator  41.05 
 
 
442 aa  233  3e-60  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_2882  two component, sigma54 specific, Fis family transcriptional regulator  43.53 
 
 
450 aa  233  3e-60  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.486122  normal 
 
 
-
 
NC_008060  Bcen_2257  two component, sigma54 specific, Fis family transcriptional regulator  43.53 
 
 
450 aa  233  3e-60  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_2871  two component, sigma54 specific, Fis family transcriptional regulator  43.53 
 
 
450 aa  233  3e-60  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0598017  n/a   
 
 
-
 
NC_002947  PP_1066  two component, sigma54 specific, transcriptional regulator, Fis family  41.75 
 
 
442 aa  233  4.0000000000000004e-60  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009074  BURPS668_0458  C4-dicarboxylate transport transcriptional response regulator DctD  43.01 
 
 
451 aa  232  5e-60  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0478  C4-dicarboxylate transport transcriptional response regulator DctD  43.01 
 
 
451 aa  232  5e-60  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA3226  C4-dicarboxylate transport transcriptional regulatory protein  43.01 
 
 
451 aa  232  5e-60  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2818  C4-dicarboxylate transport transcriptional regulatory protein  43.01 
 
 
451 aa  232  5e-60  Burkholderia mallei NCTC 10247  Bacteria  normal  0.896177  n/a   
 
 
-
 
NC_007434  BURPS1710b_0642  C4-dicarboxylate transport transcriptional regulatory protein  43.01 
 
 
451 aa  232  5e-60  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0201  C4-dicarboxylate transport transcriptional regulatory protein  43.01 
 
 
451 aa  232  5e-60  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1392  C4-dicarboxylate transport transcriptional regulatory protein  43.01 
 
 
451 aa  232  5e-60  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3995  helix-turn-helix, Fis-type  45.07 
 
 
444 aa  232  7.000000000000001e-60  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0385153 
 
 
-
 
NC_010501  PputW619_1042  two component, sigma54 specific, Fis family transcriptional regulator  45.22 
 
 
444 aa  231  9e-60  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A1516  C4-dicarboxylate transport transcriptional regulatory protein  43.06 
 
 
446 aa  231  1e-59  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_4692  two component, sigma54 specific, Fis family transcriptional regulator  42.65 
 
 
453 aa  231  1e-59  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0995721 
 
 
-
 
NC_010552  BamMC406_5221  two component, sigma54 specific, Fis family transcriptional regulator  42.65 
 
 
453 aa  230  2e-59  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_4050  putative two-component response regulator  42.96 
 
 
441 aa  230  2e-59  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I0401  C4-dicarboxylate transport transcriptional regulatory protein  42.65 
 
 
451 aa  231  2e-59  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_2788  two component, sigma54 specific, Fis family transcriptional regulator  43.06 
 
 
451 aa  231  2e-59  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_6228  two component response regulator for C4-dicarboxylate transport  43.32 
 
 
458 aa  230  2e-59  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_2926  two component, sigma54 specific, Fis family transcriptional regulator  43.06 
 
 
451 aa  231  2e-59  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_72720  putative two-component response regulator  48.12 
 
 
447 aa  230  2e-59  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.269979  normal 
 
 
-
 
NC_009654  Mmwyl1_0915  two component, sigma54 specific, Fis family transcriptional regulator  40.74 
 
 
452 aa  229  5e-59  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4176  two component, sigma54 specific, Fis family transcriptional regulator  44.36 
 
 
452 aa  229  5e-59  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.280959 
 
 
-
 
NC_012560  Avin_18020  sigma54-dependent response regulator of C4 dicarboxylate transport, two component; DctD  46.69 
 
 
446 aa  228  8e-59  Azotobacter vinelandii DJ  Bacteria  normal  0.266513  n/a   
 
 
-
 
NC_008463  PA14_46990  putative two-component response regulator  42.6 
 
 
425 aa  228  1e-58  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0103448  normal  0.161007 
 
 
-
 
NC_003910  CPS_2013  C4-dicarboxylate transport transcriptional regulatory protein  41.95 
 
 
453 aa  227  2e-58  Colwellia psychrerythraea 34H  Bacteria  normal  0.618445  n/a   
 
 
-
 
NC_009656  PSPA7_5905  two-component response regulator  43.45 
 
 
462 aa  227  2e-58  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4540  two component, sigma-54 specific, Fis family transcriptional regulator  41.3 
 
 
442 aa  227  2e-58  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.203781  normal  0.155775 
 
 
-
 
NC_004578  PSPTO_4176  sigma-54 dependent transcriptional regulator/response regulator  42.31 
 
 
442 aa  226  3e-58  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.999918  n/a   
 
 
-
 
NC_007005  Psyr_3913  helix-turn-helix, Fis-type  41.96 
 
 
442 aa  226  3e-58  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.289305  normal  0.253976 
 
 
-
 
NC_009439  Pmen_4561  two component, sigma54 specific, Fis family transcriptional regulator  46.27 
 
 
446 aa  226  3e-58  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1249  two component, sigma54 specific, Fis family transcriptional regulator  42.31 
 
 
452 aa  226  4e-58  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A2669  two component, sigma54 specific, Fis family transcriptional regulator  44.2 
 
 
439 aa  226  4e-58  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_68250  two-component response regulator  42.71 
 
 
462 aa  225  5.0000000000000005e-58  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.371358  normal  0.144717 
 
 
-
 
NC_012850  Rleg_2980  two component, sigma54 specific, transcriptional regulator, Fis family  43.97 
 
 
448 aa  224  1e-57  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0718905 
 
 
-
 
NC_007298  Daro_0477  two component, sigma54 specific, Fis family transcriptional regulator  42.41 
 
 
443 aa  224  1e-57  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0287  two component, sigma-54 specific, Fis family transcriptional regulator  43.16 
 
 
462 aa  224  1e-57  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.378858 
 
 
-
 
NC_010322  PputGB1_0288  two component, sigma54 specific, Fis family transcriptional regulator  43.84 
 
 
468 aa  224  2e-57  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_0520  two component, sigma54 specific, transcriptional regulator, Fis family  41.88 
 
 
450 aa  223  2e-57  Burkholderia phytofirmans PsJN  Bacteria  normal  0.150741  normal 
 
 
-
 
NC_009656  PSPA7_6313  putative two-component response regulator  48.34 
 
 
447 aa  224  2e-57  Pseudomonas aeruginosa PA7  Bacteria  normal  0.86051  n/a   
 
 
-
 
NC_008709  Ping_0712  C4-dicarboxylate transport sigma-54 regulatory protein  42.66 
 
 
446 aa  223  3e-57  Psychromonas ingrahamii 37  Bacteria  normal  0.212594  normal 
 
 
-
 
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