| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_0563 |
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| Symbol | |
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| ID | 5080601 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 612245 |
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| End bp | 614005 |
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| Gene Length | 1761 bp |
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| Protein Length | 586 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640497690 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001182094 |
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| Protein GI | 146291670 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACCCA GATTAAAGAT GCGTTTGGGC GATCTGTTAG TGCAAGAATC GATTATTACC
GAAGAACAGC TACAGCAAGC GTTAACTGAG CAACGTAAAA CAGGCCATAA ACTGGGTCGA
ACCTTGATTG ATTTACGCTC CATTAGCGAA CATCAATTGC TGCAATTTCT CTCCCAACAA
TTGAATTTGC CCTTACTCGA TATCAGTAAG CGCCCCATTT CAGCAGAAGT AGTACAGCTT
ATCCCTGAAG TACAAGCGCG GCGTTTTCGG GCACTTGCAG TTGAAGATAG GGGAGACAGT
GTACTGGTTG CCATGAGCGA TCCCGCGGAT TTACAGGCGC TCGATCACTT AGAGGTTCTC
GTTGCCCCTA AACGCTTAAC CTTAGCGGTT GCGCCAGAGC AACAACTGCT AGAGGCCTTT
GATAATCTTT ATCGTCGTAC CGATCAAATC GCGCAGATTG CCGGCAAGCT CGAAGAAGAA
TACGCCGCTG ATAAAATGTT TGATTTGGCG AGTTTAACCT CGGGTGATAG CGATAATGAA
ACGACCGTGG TTAAGTTACT GCAATCGATT TTCGAAGACG CGGTACAAAT GCGCGCCTCG
GATATTCATA TCGAACCCGG TGATAAAGCA CTGCGTATTC GTCAGCGTAT CGACGGTCAA
CTGCATGAAA CGATTCTGAA TGAAGTAAAT ATTGCAGCCG CCTTAGTGCT GCGGCTGAAG
TTAATGGCAG GGCTTGATAT TTCGGAAAAA CGTCTGCCAC AGGATGGGCG TTTCCATATC
GAAATCAAAG GCCATCATAT TGATGTGCGT ATGTCGACCA TGCCGATTTA CCACGGCGAA
TCTGTGGTAA TGCGTTTGCT CGATCAATCT GCGGGTTTGC TCACTCTCAA TGAAACCGGT
ATGCCGCCGC ATATTTTGGC GCGGATTCGC AAACAAATTA AACGTCCCCA TGGCATGTTA
TTGGTAACAG GCCCCACGGG TAGCGGTAAA ACTACCACGC TGTACGGCAT TTTAAGTGAG
CTTAATACCG CCGACCGTAA AATTATTACG GTGGAAGATC CGGTCGAGTA TCAATTGCCG
CGGATAAACC AAGTGCAAGT GAACCACAAG ATTGGGCTCG ATTTTTCAAA CGTACTGCGT
ACCACATTAC GTCAAGACCC CGATATCATC ATGGTCGGTG AGATGCGCGA TCAAGAAACG
GTAGAAATTG GACTACGCGG TGCCTTAACT GGTCACTTTG TGTTATCGAC GCTACATACT
AATGATGCGG TCACCAGTGC ATTGCGTTTA CTCGATATGG GGGCGGCGAG CTATTTGGTG
GCAAGCGCGC TCAGGGTGAT TATTGCTCAG CGTTTAGTTC GCCGCGTTTG CCATAATTGT
GGGGTTGACT ATCAACCTAC ACTACAGGAA AAAGCCTGGT TGAGCAGCGT CAGCCGTAAA
GATTTTTCAG CGGCGAATTT TAGAATTGGT ACGGGTTGCC AGAGTTGTAA TGGCAGTGGT
TACCGTGGTC GGATCGGTAT CTTTGAAATC CTTGAATTGG ATGAGAAGAT GATCGATGCC
ATGCGTACGG GTAATCCACA GGATTTTGCC CGCGCAGCAC TACAAAGCCC CAATTTTACG
CCACTGGCCG AGTCAGCCTT GCAATATTTA ATTGAAGGCA TGACGACCAT TGAAGAGGTG
GCGAAGCTGG TGGAAGATGT GAGTGAGTCG CAGATCCCTT TATCTAAGGA TCTGATAAGC
CAACAAGGCG TTGAGGCGTA A
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| Protein sequence | MKPRLKMRLG DLLVQESIIT EEQLQQALTE QRKTGHKLGR TLIDLRSISE HQLLQFLSQQ
LNLPLLDISK RPISAEVVQL IPEVQARRFR ALAVEDRGDS VLVAMSDPAD LQALDHLEVL
VAPKRLTLAV APEQQLLEAF DNLYRRTDQI AQIAGKLEEE YAADKMFDLA SLTSGDSDNE
TTVVKLLQSI FEDAVQMRAS DIHIEPGDKA LRIRQRIDGQ LHETILNEVN IAAALVLRLK
LMAGLDISEK RLPQDGRFHI EIKGHHIDVR MSTMPIYHGE SVVMRLLDQS AGLLTLNETG
MPPHILARIR KQIKRPHGML LVTGPTGSGK TTTLYGILSE LNTADRKIIT VEDPVEYQLP
RINQVQVNHK IGLDFSNVLR TTLRQDPDII MVGEMRDQET VEIGLRGALT GHFVLSTLHT
NDAVTSALRL LDMGAASYLV ASALRVIIAQ RLVRRVCHNC GVDYQPTLQE KAWLSSVSRK
DFSAANFRIG TGCQSCNGSG YRGRIGIFEI LELDEKMIDA MRTGNPQDFA RAALQSPNFT
PLAESALQYL IEGMTTIEEV AKLVEDVSES QIPLSKDLIS QQGVEA
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