| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_3948 |
|---|
| Symbol | |
|---|
| ID | 5086123 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009429 |
|---|
| Strand | - |
|---|
| Start bp | 851361 |
|---|
| End bp | 852818 |
|---|
| Gene Length | 1458 bp |
|---|
| Protein Length | 485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640485506 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001170107 |
|---|
| Protein GI | 146279949 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG4630] Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A |
|---|
| TIGRFAM ID | [TIGR02963] xanthine dehydrogenase, small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.804932 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.121566 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGACA TCGCGTTCAT CCTGAACGGA ACGCCCCTCA GCGTCTCGGC CGAGCCCACG
CGGACGCTCC TCGACTTCCT GCGCGAAGAC CGCGGCCTCA CCGGCACGAA GGAGGGCTGC
AACGAAGGCG ACTGCGGCGC CTGCACCGTC ATGGTGGCTG ATGAGACCGG CCCGCGCGCC
CTGAACGCCT GTCTGCTCTT CCTGCCGCAA CTGCAGGGCA AGGAGGTCCG CACCGTCGAG
GGCCTCGCCG CGCCCGACGG CCGCCTGCAT CCCGTCCAGC GGGCGATGAT CGACGAACAC
AGCTCGCAAT GCGGCTTCTG CACGCCCGGC ATCGTCATGT CGCTCGCCGT GGCGCACGCA
ACCGGCTGTC GCGACCATGA CGACACGCTC GCGGGCAACC TCTGCCGCTG CACAGGCTAC
GCCCCCATCA TCCGCGCCGC CCAAGCCGCC GAGACAGAAC CGCAGCCCCA CTGGCTGCCG
TCCTTCACTC TGCCTCAAAT ATCCTCGGGG GGGACCGTGA GCGGCGGGAG CCCCTCCCCG
GGAGGGGCAG CCGCGAACGC CCGCCCGGCG GGCGGGCACG GGGGGGCAGA CAGCCCCCCC
GCCGCCGCCA GCCGCCCGAC GAGCGTCGCG GAGCTTGCGC GTCTCTACGA GGCCCATCCC
GAGGCCACGC TGATCGCGGG CGCCACCGAC GTAGGGCTCT GGGTCACGAA AGAGCTGCGC
GACCTGCCGA CGCCGATCTT CCTTGGCGCC ATCCCGGAGC TCCGCCGCAT CGACGAGGAG
GACGGACAGC TCCGCGTCGG CGCCATGGTC ACCATCGCCG AACTGCGCGC GGCGCTGGCA
CCCCGCCTGC CCGCCTTCGC CGAACTCCTG CGCCGTTTCG CGAGCGTGCA GATCCGCAAC
GCCGCCACGA TCGGCGGCAA CATCGCCAAC GGCTCGCCCA TCGGCGACAC GCCGCCCGCC
CTGATCGCGC TCGGCGCCAC GCTGCACCTG CGTCGGGGAG AGGAGCGGCG CTCGCTGCCG
ATCGAGGACT TCTTCCTCGA CTACCGCAAG CAGGACCGGC GTCCGGGCGA GTTCGTCGAG
GCGGTCACGA TCCCCACCGA GGCCCCGGCG CTGCGCTGCT ACAAGCTGTC GAAACGGTTC
GATCAGGACA TTTCGGCGGT CTGCGGCTGC TTCAACATCG AGCTGGACGA GGGCCATGTC
GTGTCGGCCC GCGTGGCTTT CGGCGGCATG GCGGGGATCC CGAAGCGGGC GTCGGCGGTC
GAGGCCGCTC TCATCGGCCG GCCCTGGACG CTCGCCACGG CTGAGGCCGC CCGGCCGGCC
TTCGCCGAGG ATTTCACCCC GCTTTCGGAC ATGCGCGCCT CGGCCGCCTA CCGGCTGGAG
GCGGCGGCCA ACATGCTGAC CCGCGCCTTC CACGATCTCG ACGGCGGCAG GGTCTCGGTG
CTGGAGGTGG GCGCATGA
|
|---|
| Protein sequence | MTDIAFILNG TPLSVSAEPT RTLLDFLRED RGLTGTKEGC NEGDCGACTV MVADETGPRA
LNACLLFLPQ LQGKEVRTVE GLAAPDGRLH PVQRAMIDEH SSQCGFCTPG IVMSLAVAHA
TGCRDHDDTL AGNLCRCTGY APIIRAAQAA ETEPQPHWLP SFTLPQISSG GTVSGGSPSP
GGAAANARPA GGHGGADSPP AAASRPTSVA ELARLYEAHP EATLIAGATD VGLWVTKELR
DLPTPIFLGA IPELRRIDEE DGQLRVGAMV TIAELRAALA PRLPAFAELL RRFASVQIRN
AATIGGNIAN GSPIGDTPPA LIALGATLHL RRGEERRSLP IEDFFLDYRK QDRRPGEFVE
AVTIPTEAPA LRCYKLSKRF DQDISAVCGC FNIELDEGHV VSARVAFGGM AGIPKRASAV
EAALIGRPWT LATAEAARPA FAEDFTPLSD MRASAAYRLE AAANMLTRAF HDLDGGRVSV
LEVGA
|
|---|
| |