| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_4376 |
|---|
| Symbol | |
|---|
| ID | 5060862 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 4954214 |
|---|
| End bp | 4954903 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640476639 |
|---|
| Product | pentapeptide repeat-containing protein |
|---|
| Protein accession | YP_001161182 |
|---|
| Protein GI | 145596885 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1357] Uncharacterized low-complexity proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGTCC GATCCTCGGG TCCACGACGC GCCACCGACC CACGGAAGCG ACGGGAGCCG
CGTAGCCCCG TTCCGCCCAC CGAGGTCGAC CTGTGGGAGG CGACCGTGTT GGAGTCGGAG
TCAACACTGA CGTGCCAGGC TCTCTACAGC GCGCGGCTGA CCGGCCAGGA TGCCTCGTCG
GTGACCTTCC GGCAGTGCCG GTTTCGTGGG GCTGACCTGG CAGAGTGTCG ACTGGATCAG
GTGGTGTTGA GTGACTGCCT GGTGACGGAT TCCAGTTGGG CCAATCTGCG CGCCGACGGT
GGAGAGATGG CCCGGGTGCG GCTGGCGCAG TGCAGGATGA CGGGCGTGAC GTGGGCTGAC
GGCGTGCTGC GGGATGTCAC CGTCACCGGA TGCCGGGTGG ACCTGTCGGC GTGGCGGATG
ACGACTTTCG ATGCGGTGAG GTTCGAGGAC TGCAACCTTC AGGGCGCTGA CTTCACCAAT
GCGGACCTGC GGGGCGCGAC CTTCCGAGGC TGTGATCTGA CCGGGGCGGT GTTCCACCAC
GCGTCGATGG AGGGCACGCG GTTTCGGGGC TGCACCCTGG CTGGTGTCGG CGACTTCTCC
AGCTGGCGTG GCGCTGTTGT GGACCACGAG GATCTGATCA GCCTGTCATA CGGACTCGCC
CAGGCGGCCG GCATCCAGGT GGAGAACTGA
|
|---|
| Protein sequence | MPVRSSGPRR ATDPRKRREP RSPVPPTEVD LWEATVLESE STLTCQALYS ARLTGQDASS
VTFRQCRFRG ADLAECRLDQ VVLSDCLVTD SSWANLRADG GEMARVRLAQ CRMTGVTWAD
GVLRDVTVTG CRVDLSAWRM TTFDAVRFED CNLQGADFTN ADLRGATFRG CDLTGAVFHH
ASMEGTRFRG CTLAGVGDFS SWRGAVVDHE DLISLSYGLA QAAGIQVEN
|
|---|
| |