Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_1823 |
Symbol | |
ID | 5058282 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | + |
Start bp | 2086167 |
End bp | 2087561 |
Gene Length | 1395 bp |
Protein Length | 464 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 640474093 |
Product | major facilitator transporter |
Protein accession | YP_001158663 |
Protein GI | 145594366 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.000162964 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.991228 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTACCC TCTCGGTCCA TCAGGTCCGC CACCGCTATC TCATCCTGCT CGGCCTGCGC TGGCTGCCGG TCGGCCTGCT GGTTCCGGTC TTCGTCCTGC TGATGCAGGA GCGGGGCCTC ACCCTTGCCG AGATCGGCAT GGCGTTCGCG GCCCAGGGTG TCCTCGTCCT CGCGCTCGAG TTGCCGACCG CCGGGCTCGC CGACGCCGTG GGACGCCGGC CGGTGCTGGT GCTCGCCGCG GTGGTCAACC TCGCCTCCGT GGCGCTCTTC GTCGTGGCCG ACTCGTTCGC CCTACTGGTG GCGGTGTGGG CGTTGCAGGG GGTCTATCGG GCGCTGGACA GCGGCCCGCT CGAGTCCTGG TTCGTGGACA GCACCCTCGC CGCCGACCCT GAGGCCGAGT ACGAGCGGGG CCTGAGCCAG GGCGGGACGG CGGTCGGCGT CGCCATGGCG GCCGGTGCCC TGCTCAGCGG CGGGCTGGTC GCGTTCGGCC CGGTCGGCCC GTTCAGCGCG TTGACCATGC CGATCGTGGC CATCGTGGTG TTGCAGGTCG TCGGGCTGGT GGCCCTCCTC GCCCTGCTGC GCGAGCGTCG TCCCACCGCC GGGTCGTCGG CGCTACGCGA GTCGATCGCG GAGGCCCCCC GGATGATCGG CCAGGCGATG GGGCTGCTGC GCCGCTCCCG GGTGCTGCTC GCCCTGCTCT CGGTCGAGCT CTTCTGGGGC TTCGGCATGG TCACTTTCGA AGCTCTCCTG CCGGTCCGAC TCGCCGAGGT GCTCGGCGAC GCCGATCGGG CCGGGGCGCT GCTCGGGCCG GCGACCATGG TGGCCTGGCT CGCGAATGCC GGCGGCGCGG CGGCGACCCC GCTGCTCACC CGGCGACTGG GCGCCGCGCC CGCCGCGGCG CTGCTGCGGA TCGCGCAGGG CGTCACCGTG GTCGGGATGG CGCTGCTCGC CGGTCCGGTC GGCGTGCTGG TCGCCTTCGT CGTGTGCTAC GTCGTGCATG GCGCCTCGAA CCCGTTGCAC ATGGGGCTGG TGCACCGACA GGTCGACGGG CCGTACCGGA CCAGTGTGGT GTCCCTGAAC TCGATGGTGT CCATGCCCGC CGGTGCCGCC GGGGGGATCG TGCTCGGCCT GGTCGCCGAC CGTGCCGGCG TCAGCGTCGC GATGCTGGTC GGCGCGGTCG TGCTCGTGAT TGCCGCGCCG CTGTACCTGC CCGCCTGGCG GGCGAGCCGG GACGGTTCTC CCGCCCCGGT CGGTGCGCCA ACGGCCGCCG CCTCCCCCGA GCCCCCGGAA CCGGCGACCC AGCCCGACAC CTCGGCGCCG GTCAGTGGGC AGCCCGGCGT GCCCCCGGCT CGCGACGGTG ATCCGACAAC CGGCGCGGGC GCGGCACGGC GCTGA
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Protein sequence | MATLSVHQVR HRYLILLGLR WLPVGLLVPV FVLLMQERGL TLAEIGMAFA AQGVLVLALE LPTAGLADAV GRRPVLVLAA VVNLASVALF VVADSFALLV AVWALQGVYR ALDSGPLESW FVDSTLAADP EAEYERGLSQ GGTAVGVAMA AGALLSGGLV AFGPVGPFSA LTMPIVAIVV LQVVGLVALL ALLRERRPTA GSSALRESIA EAPRMIGQAM GLLRRSRVLL ALLSVELFWG FGMVTFEALL PVRLAEVLGD ADRAGALLGP ATMVAWLANA GGAAATPLLT RRLGAAPAAA LLRIAQGVTV VGMALLAGPV GVLVAFVVCY VVHGASNPLH MGLVHRQVDG PYRTSVVSLN SMVSMPAGAA GGIVLGLVAD RAGVSVAMLV GAVVLVIAAP LYLPAWRASR DGSPAPVGAP TAAASPEPPE PATQPDTSAP VSGQPGVPPA RDGDPTTGAG AARR
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