| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1313 |
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| Symbol | |
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| ID | 5053084 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1392444 |
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| End bp | 1393034 |
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| Gene Length | 591 bp |
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| Protein Length | 196 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640471485 |
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| Product | membrane lipoprotein lipid attachment site |
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| Protein accession | YP_001156091 |
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| Protein GI | 145589494 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3417] Collagen-binding surface adhesin SpaP (antigen I/II family) |
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| TIGRFAM ID | [TIGR02722] uncharacterized proteobacterial lipoprotein |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.565237 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAATTT CTCATCAAAC TTTCCGTCTC TCTGTACTTT CCGTGACTAT GGGCTTGTTG
GTTGCTTGCT CTGGTCCACA GGTGCGCTAT GGTGATGCCA AGCAAGTTGA AACTGTGAAC
GCGGACTACG GCTCAACAGA CCTTCAGATG ATTGCTGAAG CGATGACTAG ATCATTACTC
CAATCTAAAG CCATCTCGGG CAGTAAAGAT GCCCCGATTG TGACTTTGGC TGATGTGAAG
AACAAGACCT CTGAATACAT TGATACTCGT GTGATCACCG ATAAGATTCG CACGCAATTG
CTCAAGAGTG GCCAGGTCCG TTTTGCAGTA AGCGTTTCTG AAATGCAAAA CCAAACTGAA
GAGCTGAAGC GTCAAAATCA ATCTGGCCTC TATAAGAACA GCACAATTTC TAAAACTGGC
AATATGCAGG GTGCGCAATA CCGCATTGAA GGATCTATTG CATCCATTGT TAAAACCAAT
AAAGACGTAA AAGATGTTTA TTACGTGTTT AATTTAAATC TCATCAATAA TGAATCTGGC
CTCATTGAGT GGGCTGATGA AAAAGAAATT CGTAAAACGG CTACGCGTTA A
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| Protein sequence | MKISHQTFRL SVLSVTMGLL VACSGPQVRY GDAKQVETVN ADYGSTDLQM IAEAMTRSLL
QSKAISGSKD APIVTLADVK NKTSEYIDTR VITDKIRTQL LKSGQVRFAV SVSEMQNQTE
ELKRQNQSGL YKNSTISKTG NMQGAQYRIE GSIASIVKTN KDVKDVYYVF NLNLINNESG
LIEWADEKEI RKTATR
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