Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_0327 |
Symbol | |
ID | 5053317 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | - |
Start bp | 321841 |
End bp | 322590 |
Gene Length | 750 bp |
Protein Length | 249 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 640470479 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001155112 |
Protein GI | 145588515 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.726547 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | TTGAACAATA CAAAACGAAT TGCCATTATT GGGGCTACTT CATCTATAGC TGAGCATTGC GCAAGAATAT GGGCACAACA AGGTTCAGTA GAATTAATTT TGGTTGGTAG GGATCAGCGA AAATTAGAGA TAGTCGCCGC TGACTTGCTA GTGAGATCAC AAAACACAAA AATAGAAATA GTGGTGACTG ATTTTATCGA CCCAACTGCC ATTCAAAATA CAGTTGATGC TCTATTTACA TTTCAACCAA TCGATATTGC CTTAATTGCA CACGGAACGC TTCCAGAGCA ACAGGATTGT CAGAGTAATT TAGGGTTAAA TTACAGCACC TTAGAAATTA ATGGAATTTC CCCAGTGCTC TATGCAGAAG CCTTTGCCCA ACATATGACC AAACTAAATC AAGGCTCTAT TGCCATTATT GGTTCTGTTG CAGGCGATCG CGGACGTAAA TCAAACTATG TTTATGGAGC CGCGAAAGGT CTAGTGACGA GATACGCGCA AGGATTACAA CACCGCTTTG CAGGAACTGG GGTTAATGTC TCACTCATTA AACCAGGCCC AACCAATACA CCTATGACTG CGGCGATGAA AGGTAGCGAG AAATTTGCGA CGCCAGAAGA AGTCGCCAAA ACTATAACTG CAGGAATTGA ATCCAAGAAA GCGGTAATTT ATGCACCTGC TAAATGGTGG CTAATTATGA TGGTCATACG ACATCTTCCA AGTCTCATTT TTAACAAGAT GAACATCTAG
|
Protein sequence | MNNTKRIAII GATSSIAEHC ARIWAQQGSV ELILVGRDQR KLEIVAADLL VRSQNTKIEI VVTDFIDPTA IQNTVDALFT FQPIDIALIA HGTLPEQQDC QSNLGLNYST LEINGISPVL YAEAFAQHMT KLNQGSIAII GSVAGDRGRK SNYVYGAAKG LVTRYAQGLQ HRFAGTGVNV SLIKPGPTNT PMTAAMKGSE KFATPEEVAK TITAGIESKK AVIYAPAKWW LIMMVIRHLP SLIFNKMNI
|
| |