More than 300 homologs were found in PanDaTox collection
for query gene Pnuc_0327 on replicon NC_009379
Organism: Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009379  Pnuc_0327  short-chain dehydrogenase/reductase SDR  100 
 
 
249 aa  514  1.0000000000000001e-145  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.726547  n/a   
 
 
-
 
NC_007298  Daro_1708  Short-chain dehydrogenase/reductase SDR  58.4 
 
 
250 aa  306  2.0000000000000002e-82  Dechloromonas aromatica RCB  Bacteria  normal  0.361807  normal 
 
 
-
 
NC_008740  Maqu_1648  short-chain dehydrogenase/reductase SDR  56.33 
 
 
245 aa  291  1e-77  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_0062  short-chain dehydrogenase/reductase SDR  56 
 
 
254 aa  273  1.0000000000000001e-72  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_6249  short chain dehydrogenase  42.74 
 
 
245 aa  193  2e-48  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2301  short chain dehydrogenase  42.74 
 
 
246 aa  183  2.0000000000000003e-45  Pseudomonas syringae pv. syringae B728a  Bacteria  decreased coverage  0.00458311  hitchhiker  0.00750193 
 
 
-
 
NC_011071  Smal_0498  short chain dehydrogenase  44.94 
 
 
243 aa  182  4.0000000000000006e-45  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.795397 
 
 
-
 
NC_002977  MCA2567  short chain dehydrogenase  40.08 
 
 
245 aa  179  4e-44  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4209  short-chain dehydrogenase/reductase SDR  38.31 
 
 
247 aa  175  5e-43  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.351821  normal  0.500614 
 
 
-
 
NC_013889  TK90_1010  short-chain dehydrogenase/reductase SDR  38.91 
 
 
254 aa  171  1e-41  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.904003  normal  0.571542 
 
 
-
 
NC_008789  Hhal_1550  short-chain dehydrogenase/reductase SDR  38.62 
 
 
248 aa  169  4e-41  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_2273  short chain dehydrogenase  42.34 
 
 
246 aa  164  1.0000000000000001e-39  Burkholderia phymatum STM815  Bacteria  normal  0.869936  normal  0.452458 
 
 
-
 
NC_010681  Bphyt_0896  short chain dehydrogenase  38.49 
 
 
246 aa  162  5.0000000000000005e-39  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc0171  short chain dehydrogenase  37.35 
 
 
246 aa  161  9e-39  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.808724 
 
 
-
 
NC_007951  Bxe_A3786  short chain dehydrogenase  37.1 
 
 
246 aa  158  8e-38  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.468877 
 
 
-
 
NC_010338  Caul_4798  short-chain dehydrogenase/reductase SDR  39.13 
 
 
255 aa  144  1e-33  Caulobacter sp. K31  Bacteria  normal  0.376241  normal  0.808586 
 
 
-
 
NC_007575  Suden_1219  short chain dehydrogenase  34.41 
 
 
243 aa  139  3e-32  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_1026  short chain dehydrogenase  34.13 
 
 
270 aa  132  6e-30  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.969015  normal 
 
 
-
 
NC_007484  Noc_1950  Short-chain dehydrogenase/reductase SDR  34.02 
 
 
246 aa  129  6e-29  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_5663  short-chain dehydrogenase/reductase SDR  28.92 
 
 
251 aa  126  3e-28  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.150929 
 
 
-
 
NC_008554  Sfum_0143  short chain dehydrogenase  33.2 
 
 
243 aa  122  6e-27  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.896795 
 
 
-
 
NC_007802  Jann_2832  short chain dehydrogenase  34.69 
 
 
244 aa  120  9.999999999999999e-27  Jannaschia sp. CCS1  Bacteria  normal  0.0580098  normal  0.214495 
 
 
-
 
NC_011666  Msil_2164  short chain dehydrogenase  34.24 
 
 
247 aa  118  7.999999999999999e-26  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_012853  Rleg_5791  short chain dehydrogenase  35.34 
 
 
249 aa  117  1.9999999999999998e-25  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4050  short chain dehydrogenase  34 
 
 
243 aa  115  6e-25  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.119249  normal  0.0322229 
 
 
-
 
NC_011126  HY04AAS1_0976  short-chain dehydrogenase/reductase SDR  32.08 
 
 
244 aa  115  6e-25  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_1597  short chain dehydrogenase  31.28 
 
 
245 aa  114  1.0000000000000001e-24  Methylobacterium populi BJ001  Bacteria  normal  0.139184  normal  0.109463 
 
 
-
 
NC_009485  BBta_7180  short chain dehydrogenase  32.14 
 
 
248 aa  112  5e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.367118  normal 
 
 
-
 
NC_009565  TBFG_13825  short chain dehydrogenase  27.09 
 
 
254 aa  100  2e-20  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_009430  Rsph17025_3976  short chain dehydrogenase  35.25 
 
 
245 aa  100  3e-20  Rhodobacter sphaeroides ATCC 17025  Bacteria  decreased coverage  0.00930617  normal 
 
 
-
 
NC_013159  Svir_01390  short-chain dehydrogenase of unknown substrate specificity  26.8 
 
 
251 aa  100  3e-20  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.253341 
 
 
-
 
NC_009077  Mjls_5382  short chain dehydrogenase  26.29 
 
 
256 aa  97.1  2e-19  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_5001  short chain dehydrogenase  26.29 
 
 
256 aa  97.1  2e-19  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_5089  short chain dehydrogenase  26.29 
 
 
256 aa  97.1  2e-19  Mycobacterium sp. KMS  Bacteria  normal  normal  0.415289 
 
 
-
 
NC_013124  Afer_1741  short-chain dehydrogenase/reductase SDR  26.32 
 
 
252 aa  96.3  4e-19  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4216  short-chain dehydrogenase/reductase SDR  32.93 
 
 
254 aa  96.3  4e-19  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_3435  short-chain dehydrogenase/reductase SDR  26.72 
 
 
249 aa  92.8  4e-18  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.220031  normal 
 
 
-
 
NC_014230  CA2559_03335  putative oxidoreductase  29.02 
 
 
240 aa  92.4  5e-18  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.472323  n/a   
 
 
-
 
NC_013441  Gbro_0251  short-chain dehydrogenase/reductase SDR  25.51 
 
 
253 aa  92.8  5e-18  Gordonia bronchialis DSM 43247  Bacteria  normal  0.29884  n/a   
 
 
-
 
NC_009338  Mflv_1177  short chain dehydrogenase  26.38 
 
 
260 aa  90.1  3e-17  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.56412  normal 
 
 
-
 
NC_011365  Gdia_3539  short-chain dehydrogenase/reductase SDR  30 
 
 
271 aa  88.2  1e-16  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_5628  short chain dehydrogenase  25.2 
 
 
260 aa  87.8  1e-16  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.391011  normal 
 
 
-
 
NC_009338  Mflv_3100  short-chain dehydrogenase/reductase SDR  25.3 
 
 
247 aa  87.4  2e-16  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0680281  normal  0.231101 
 
 
-
 
NC_013159  Svir_22830  short-chain dehydrogenase of unknown substrate specificity  24.39 
 
 
247 aa  87.8  2e-16  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.702609 
 
 
-
 
NC_007614  Nmul_A2453  short chain dehydrogenase  29.6 
 
 
261 aa  86.7  3e-16  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_006368  lpp1759  hypothetical protein  27.13 
 
 
240 aa  85.5  7e-16  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_009379  Pnuc_1974  short-chain dehydrogenase/reductase SDR  27.82 
 
 
258 aa  84  0.000000000000002  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0813  short-chain dehydrogenase/reductase SDR  27.27 
 
 
249 aa  84.3  0.000000000000002  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_12109  short-chain type dehydrogenase  29.7 
 
 
249 aa  82.8  0.000000000000005  Mycobacterium tuberculosis F11  Bacteria  normal  0.0969854  normal  0.809118 
 
 
-
 
NC_011666  Msil_1220  short-chain dehydrogenase/reductase SDR  28.74 
 
 
267 aa  82.4  0.000000000000006  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0396452 
 
 
-
 
NC_014210  Ndas_0271  short-chain dehydrogenase/reductase SDR  29.7 
 
 
250 aa  82  0.000000000000008  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_006369  lpl1759  hypothetical protein  26.72 
 
 
240 aa  81.6  0.00000000000001  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_013441  Gbro_2475  short-chain dehydrogenase/reductase SDR  27.41 
 
 
252 aa  80.1  0.00000000000003  Gordonia bronchialis DSM 43247  Bacteria  normal  0.907428  n/a   
 
 
-
 
NC_011761  AFE_3014  oxidoreductase, short-chain dehydrogenase/reductase family  27.94 
 
 
257 aa  80.1  0.00000000000003  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.698047  n/a   
 
 
-
 
NC_007333  Tfu_2462  putative short chain dehydrogenase  24.9 
 
 
255 aa  79.7  0.00000000000004  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_3342  short-chain dehydrogenase/reductase SDR  26.64 
 
 
245 aa  79.7  0.00000000000004  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.468783  n/a   
 
 
-
 
NC_009664  Krad_3873  short-chain dehydrogenase/reductase SDR  25.3 
 
 
257 aa  79.7  0.00000000000004  Kineococcus radiotolerans SRS30216  Bacteria  normal  hitchhiker  0.00422733 
 
 
-
 
NC_008609  Ppro_2952  short-chain dehydrogenase/reductase SDR  28.76 
 
 
253 aa  78.6  0.00000000000009  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP2049  short chain dehydrogenase/reductase family oxidoreductase  29.65 
 
 
230 aa  77.8  0.0000000000001  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_0548  short-chain dehydrogenase/reductase SDR  30.4 
 
 
261 aa  78.6  0.0000000000001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_007969  Pcryo_1188  short chain dehydrogenase  28.4 
 
 
291 aa  78.2  0.0000000000001  Psychrobacter cryohalolentis K5  Bacteria  normal  0.0152839  normal  0.145128 
 
 
-
 
NC_009664  Krad_4024  short-chain dehydrogenase/reductase SDR  25.44 
 
 
247 aa  78.2  0.0000000000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0286474  normal  0.0317437 
 
 
-
 
NC_010117  COXBURSA331_A1015  short chain dehydrogenase/reductase family oxidoreductase  29.27 
 
 
263 aa  77.4  0.0000000000002  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_2519  short-chain dehydrogenase/reductase SDR  27.27 
 
 
260 aa  76.6  0.0000000000003  Mycobacterium sp. JLS  Bacteria  normal  0.362714  normal  0.975867 
 
 
-
 
NC_007575  Suden_1903  Short-chain dehydrogenase/reductase SDR  25.71 
 
 
242 aa  76.6  0.0000000000003  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_2482  short-chain dehydrogenase/reductase SDR  27.27 
 
 
260 aa  76.6  0.0000000000003  Mycobacterium sp. MCS  Bacteria  normal  0.257102  n/a   
 
 
-
 
NC_008705  Mkms_2527  short-chain dehydrogenase/reductase SDR  27.27 
 
 
260 aa  76.6  0.0000000000003  Mycobacterium sp. KMS  Bacteria  normal  normal  0.712859 
 
 
-
 
NC_009727  CBUD_1145  short chain dehydrogenase  29.27 
 
 
321 aa  77  0.0000000000003  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_007204  Psyc_1201  short chain dehydrogenase  28.11 
 
 
289 aa  76.3  0.0000000000004  Psychrobacter arcticus 273-4  Bacteria  normal  0.0718298  normal  0.0224844 
 
 
-
 
NC_010581  Bind_0286  short-chain dehydrogenase/reductase SDR  27.91 
 
 
267 aa  76.6  0.0000000000004  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_009632  SaurJH1_2555  short-chain dehydrogenase/reductase SDR  30.4 
 
 
231 aa  74.7  0.000000000001  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.459049  n/a   
 
 
-
 
NC_009487  SaurJH9_2505  short-chain dehydrogenase/reductase SDR  30.4 
 
 
231 aa  74.7  0.000000000001  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_3326  short-chain dehydrogenase/reductase SDR  27.41 
 
 
249 aa  75.1  0.000000000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008312  Tery_0205  short-chain dehydrogenase/reductase SDR  28.57 
 
 
257 aa  74.7  0.000000000001  Trichodesmium erythraeum IMS101  Bacteria  normal  0.76225  normal  0.242071 
 
 
-
 
NC_012917  PC1_2681  short-chain dehydrogenase/reductase SDR  29.95 
 
 
261 aa  74.7  0.000000000001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_2791  short-chain dehydrogenase/reductase SDR  27.03 
 
 
249 aa  74.3  0.000000000002  Cyanothece sp. PCC 8802  Bacteria  normal  0.786749  normal  0.588294 
 
 
-
 
NC_010505  Mrad2831_0946  short-chain dehydrogenase/reductase SDR  29.6 
 
 
255 aa  74.3  0.000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.841301 
 
 
-
 
NC_013501  Rmar_0194  short-chain dehydrogenase/reductase SDR  28.57 
 
 
233 aa  73.9  0.000000000002  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1398  short-chain dehydrogenase/reductase SDR  26.34 
 
 
249 aa  73.6  0.000000000003  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.646056  n/a   
 
 
-
 
NC_009524  PsycPRwf_0469  short chain dehydrogenase  29.08 
 
 
292 aa  73.2  0.000000000003  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5631  putative short-chain dehydrogenase  29.65 
 
 
253 aa  72.8  0.000000000005  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_0891  short-chain dehydrogenase/reductase SDR  28.64 
 
 
260 aa  72.4  0.000000000006  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.375615 
 
 
-
 
NC_013131  Caci_3135  short-chain dehydrogenase/reductase SDR  24.85 
 
 
246 aa  72  0.000000000007  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009080  BMA10247_2168  short chain dehydrogenase/reductase family oxidoreductase  25 
 
 
262 aa  72  0.000000000008  Burkholderia mallei NCTC 10247  Bacteria  normal  0.408948  n/a   
 
 
-
 
NC_006348  BMA2291  short chain dehydrogenase/reductase family oxidoreductase  25 
 
 
262 aa  72  0.000000000008  Burkholderia mallei ATCC 23344  Bacteria  normal  0.448302  n/a   
 
 
-
 
NC_007434  BURPS1710b_3288  short chain dehydrogenase/reductase family oxidoreductase  25 
 
 
262 aa  72  0.000000000008  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0537  short chain dehydrogenase/reductase family oxidoreductase  25 
 
 
262 aa  72  0.000000000008  Burkholderia mallei SAVP1  Bacteria  normal  0.618923  n/a   
 
 
-
 
NC_008836  BMA10229_A1063  short chain dehydrogenase/reductase family oxidoreductase  25 
 
 
262 aa  72  0.000000000008  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3273  short chain dehydrogenase/reductase family oxidoreductase  25 
 
 
262 aa  72  0.000000000008  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_1141  short-chain dehydrogenase/reductase SDR  23.14 
 
 
244 aa  72  0.000000000009  Magnetococcus sp. MC-1  Bacteria  normal  0.46714  normal 
 
 
-
 
NC_014158  Tpau_4120  short-chain dehydrogenase/reductase SDR  25.1 
 
 
254 aa  71.6  0.00000000001  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_5682  short-chain dehydrogenase/reductase SDR  27.35 
 
 
239 aa  71.6  0.00000000001  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_010117  COXBURSA331_A1696  short chain dehydrogenase/reductase family oxidoreductase  30.35 
 
 
258 aa  70.5  0.00000000002  Coxiella burnetii RSA 331  Bacteria  normal  0.817291  n/a   
 
 
-
 
NC_009074  BURPS668_3237  short chain dehydrogenase/reductase family oxidoreductase  25.2 
 
 
262 aa  70.5  0.00000000002  Burkholderia pseudomallei 668  Bacteria  normal  0.85457  n/a   
 
 
-
 
NC_009901  Spea_0885  short chain dehydrogenase  25.1 
 
 
250 aa  70.5  0.00000000002  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_1330  short-chain dehydrogenase/reductase SDR  26.8 
 
 
247 aa  70.9  0.00000000002  Gordonia bronchialis DSM 43247  Bacteria  normal  0.425796  n/a   
 
 
-
 
NC_009727  CBUD_0471  short chain dehydrogenase  30.35 
 
 
258 aa  71.2  0.00000000002  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_64840  putative short-chain dehydrogenase  29.73 
 
 
253 aa  70.5  0.00000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.000000142595  normal 
 
 
-
 
NC_008530  LGAS_1341  3-oxoacyl-acyl carrier protein reductase  27.36 
 
 
242 aa  70.9  0.00000000002  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  0.000246645  normal 
 
 
-
 
NC_007413  Ava_2965  Short-chain dehydrogenase/reductase SDR  27.15 
 
 
293 aa  70.5  0.00000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
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