| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pars_1743 |
|---|
| Symbol | |
|---|
| ID | 5054983 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum arsenaticum DSM 13514 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009376 |
|---|
| Strand | - |
|---|
| Start bp | 1568431 |
|---|
| End bp | 1569327 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640469286 |
|---|
| Product | zinc finger TFIIB-type domain-containing protein |
|---|
| Protein accession | YP_001153946 |
|---|
| Protein GI | 145591944 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1405] Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.744593 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.000774381 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACGCGCA GACTTATTTT TGAGATAGAG GAACAGGTAT GCCCAGTATG TGGCTCTAAG
GGAGAAATTA CAATAGACCA CGAACGGGGG CAGGTTGTTT GTAGAGCCTG CGGCACAGTA
GTTAGAGAGG GGATTGCAGA CTTAGGCCCC GAGTGGAGAA AACCGGAGTC CTCTAGGGCC
TATTCCGGGC CAATGGGAGC CTCTATAGGG GATATAGAAT ATGGAAATGT AAAAATTACA
GACAAGCTAA AGGCTCTGAG CCTTAAGAAG TTCTCCCGGC CCATTTCCAC CCCTCTTGAA
AGGGTGGAGT CGGAAATTAG AGAGTTCCTA GAATCTGCCA AGGAAAAGCT TAACATCCCT
AAGACGGTTG TAGAAGAAAC GGTTATTCTA TACAAGAAAC TCTACGACGC AGGTTATAGG
GCGCCGCGTC TCGAGAGCTA CGCAGCTGTT CTGTACTTCA CCTTAAAAAG ACACGGCATA
CCCTCTGTTA CGTTGAAGAA AATTGTGGAG GGCCTAGGGA TAGAGCGCTC GTCGTTCATC
TCGGCATATA TGGAGCTTAT GAAAGTGGCT AGCCAGCTGG GAATTAAACC GCCGCGGGTA
GATCCCAAGG TCTATATACC GAAGATAGTC TCGGCGCTGG GGCTTGGCGA TGAGAAGTCG
GCCGAGGTCC AGCGGATTGC CGTGGATATT TTGAGGTACA TTACGTCAAT ACCCCGTATT
AAAAATGGTA GAAAGCCCCA GGTGCTGGCC GCGGCTGCCG TATTTTTCGC TTGTTACATA
GCCGGCGTGG AGATCACACA GAAGGAGGTG GCAAAAGCTG CTGACTCCAC AGAGGGTCCT
GTGCGGGAGC TGTTGAAAGA TCTCTCAAAT GTTCTCTACA TCGAGATTAC TGTGTAA
|
|---|
| Protein sequence | MTRRLIFEIE EQVCPVCGSK GEITIDHERG QVVCRACGTV VREGIADLGP EWRKPESSRA
YSGPMGASIG DIEYGNVKIT DKLKALSLKK FSRPISTPLE RVESEIREFL ESAKEKLNIP
KTVVEETVIL YKKLYDAGYR APRLESYAAV LYFTLKRHGI PSVTLKKIVE GLGIERSSFI
SAYMELMKVA SQLGIKPPRV DPKVYIPKIV SALGLGDEKS AEVQRIAVDI LRYITSIPRI
KNGRKPQVLA AAAVFFACYI AGVEITQKEV AKAADSTEGP VRELLKDLSN VLYIEITV
|
|---|
| |