| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_1167 |
|---|
| Symbol | |
|---|
| ID | 4955373 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | + |
|---|
| Start bp | 1239816 |
|---|
| End bp | 1241054 |
|---|
| Gene Length | 1239 bp |
|---|
| Protein Length | 412 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640180336 |
|---|
| Product | aspartate kinase |
|---|
| Protein accession | YP_001112526 |
|---|
| Protein GI | 134299030 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0527] Aspartokinases |
|---|
| TIGRFAM ID | [TIGR00656] aspartate kinase, monofunctional class
[TIGR00657] aspartate kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000835866 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGTTG TCAAAAAATT TGGCGGGAGT TCAGTGGCAG ATCCCGAACG AATAAAGAGA
GTGGCTAGAA GAGTTGTAGA AGAGCATCAA AAGGGAAATC AGGTGGTAGT AACTGTATCG
GCCATGGGTG ATACCACAGA TGATTTAGTT AGTTTGGCAA AACAAGTAAC GAATGATCCC
TCCGAAAGGG AAATGGATAT GTTACTCTCC ACAGGAGAAC AAATATCCAT AGCTCTTTTA
TCAATGGCAA TTCGCGATTT AGGGTCCGAT GTAATATCTC TTACTGGTGG ACAAGTTGGT
ATTTATACTG ATGATGTGCA CAGCAAAGCC AAAATTTTAA AAATAGAAAC CAGTCGAGTA
AAGGAAGAAT TGGAACAAGG GCGTGTTGTT GTTGTGGCTG GTTTCCAAGG AATCAAATCG
AATCATGATA TAACCACATT GGGTCGTGGT GGTTCTGACA CCACTGCAGT GGCTTTAGCT
GCAGCCCTGA AGGCAGATAT CTGTGAGATA TTTACAGATG TTGATGGTGT TTATACAACA
GACCCAAGGT TGGTACCGGA GGCCAGCAAA TTAAAAAATA TTTCCTTTGA TGAAATGCTG
GAACTTGCCA GCTTAGGAGC ACAAGTATTG CACCCCCGTT CAGTGGAGTT AGCAAAACAA
TATGGCATTC CCATTCATGT TCGCACCAGT TTTGATCATC GAGAAGGAAC TATTGTTGAG
GAGGCACCAA ATATGGAAAA TGCACCAGTG GTTAGTGGAG TTGCCCATGA TTATAACGTT
GCCAAAATTG GCTTATTTGA TGTACCCGAT CAGCCTGGCG TAGCCAAGAA AATCTTTAAG
GCTTTGTCAA AGCATAATCT TAATGTAGAT ATGATTATTC AAAGTGCTAT GCGAAACAAC
ATGAATGATA TTGGTTTTAC CACAACCCAG GATGATCTTA GGAAAGCCCT ACAAACCATT
GAGGCTATTC AGCAAGAAGT AGGCTTTAGA GGCTACAATC ACGATGAAGA TGTGGCAAAG
GTATCCATTG TAGGAGCAGG GATGATTTCT CACCCGGGTG TAGCAGCAGA TATGTTTGAA
GCTCTGGCAG ATGAAGGAAT TAACCTTGAA ATGATAACCA CTTCAGAAAT TAAAGTATCC
TGTGTCATTA AAAGGTCTGA GACAGAAAAA GCAGTGAAGG CACTGCACAA GAAATTTAAA
CTGGACAACC TGGCAGAAGC TAGTATTTAT AACAGATAA
|
|---|
| Protein sequence | MLVVKKFGGS SVADPERIKR VARRVVEEHQ KGNQVVVTVS AMGDTTDDLV SLAKQVTNDP
SEREMDMLLS TGEQISIALL SMAIRDLGSD VISLTGGQVG IYTDDVHSKA KILKIETSRV
KEELEQGRVV VVAGFQGIKS NHDITTLGRG GSDTTAVALA AALKADICEI FTDVDGVYTT
DPRLVPEASK LKNISFDEML ELASLGAQVL HPRSVELAKQ YGIPIHVRTS FDHREGTIVE
EAPNMENAPV VSGVAHDYNV AKIGLFDVPD QPGVAKKIFK ALSKHNLNVD MIIQSAMRNN
MNDIGFTTTQ DDLRKALQTI EAIQQEVGFR GYNHDEDVAK VSIVGAGMIS HPGVAADMFE
ALADEGINLE MITTSEIKVS CVIKRSETEK AVKALHKKFK LDNLAEASIY NR
|
|---|
| |