Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3619 |
Symbol | |
ID | 4922405 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 4315828 |
End bp | 4317951 |
Gene Length | 2124 bp |
Protein Length | 707 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640165241 |
Product | general secretion pathway protein D |
Protein accession | YP_001095744 |
Protein GI | 127514547 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0440074 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAACA AGAAAATACG CCGCAATCTT ATCGCGAGCG TCGTGATGGG CGCCTCGCTG TTAGCGCCAC AAGTGGCGTG GTCGGAACAA TACGCGGCTA ATTTCAAGGG CACTGACATT CAGGAATTTA TCAACATAGT TGGTAAGAAC CTGAACCGGA CTATCATCGT CGACCCTACT GTACGCGGCA AGATCAACGT ACGCAGTTAC GATCTGCTTA ACGACGAGCA GTACTATCAA TTCTTCCTTA ACGTGTTGCA GGTCTATGGC TACGCCGTAG TCGAGATGGA CAACAACATC ATCAAGGTGA TCAAGGACAA AGACGCCAAG ACCTCGGCGA TCCGCGTTGC CGACGACAGC ACCCCTGGCC TTGGCGATGA GATGGTGACC CGCATTGTCG CGCTCTATAA CACAGAGGCC AAACAGCTTG CTCCCTTGCT GCGTCAGCTA AATGACAACG CCGGTGGCGG TAACGTGGTC AACTATGACC CGTCAAACGT CTTGATGATC TCTGGTCGTG CGGCCGTGGT GAACAAGCTG GTGGAAATTG TCCGCCGCGT CGATAAGCAG GGTGATACCG AGGTACAGGT TGTGCCGCTG GAATACGCCT CTGCCGGCGA GATGGTGCGC ATTATCGACA CCCTGTATCG CGCCAGCGCC AACCAGTCAC AGCTACCGGG TCAGGCGCCT AAGGTGGTTG CCGACGAGCG TACCAACGCC GTAATCGTCA GCGGTGATGA GAAGAGTCGT CAGCGCGTGG TGGCCCTGAT TAAGAAGTTA GATGCCGAGC AGGCGACCAC AGGTAATACC AAGGTGCGTT ACCTGCGTTA TGCCAAGGCC GAAGACTTAG TGGAAGTGCT GACCGGCTTT GCCGAGAAGC TGGCCAAAGA TCAGGAGGGC GGTCAGGCCC AGGGTGGTCG CAGCAAGCGC CGCAACGAAA TTAATATCAT GGCCCACCCA GACACCAACG CACTGGTGAT CAGCGCCGAG CCAGATCAGA TGCGCACCCT TGAGAGCGTC ATCAACCAGT TAGATATACG CCGCGCGCAA GTATTGGTGG AAGCCATTAT CGTCGAGGTC GCCGAGGGTG ACGATGTCGG CTTTGGCGTG CAGTGGGCCA CAGAGGCCGG TGGCGGTACT CAGTTTAATA ATCTAGGCCC CACTATCGGC GAGATCGGTG CCGGTATCTG GGCGGCGCAA GATGAGAAGG CAAGTAATAG CTGTACCGGC TCTGGTGATA ACCTGACCTG TACCGATAAT CCGGACAAGA AGGGTGACAT CACCCTGCTG GCCCAGGCGC TGGGCAAGGT CAACGGTATG GCATGGGGCG TGGCTATGGG TGACTTCGGC GCCCTGATCC AAGCGGTATC GAGTGATACC AAGTCGAACG TGCTGGCAAC CCCTTCTATC ACTACCCTGG ATAACCAGGA AGCCTCCTTC ATCGTGGGTG ATGAGGTGCC GGTACTGACA GGCAGCCAGA ACTCTAGCAA TGGTAACAGC AACCCCTTCC AGACGGTTGA GCGTAAGGAG GTGGGCGTGA AGTTAAAGGT GGTGCCACAG ATTAACGAAG GCACTACGGT TAAGCTCACC ATCGAGCAGG AAGTCTCAGG CATCAACGGG AAGACAGGGG TCGATGTGAC CTTCGCGACC CGTCGCCTGA CCACTACCGT GATGGCCGAT TCAGGCCAGA TAGTGGTGCT GGGTGGTCTG ATCAACGAAG AGGTGCAGGA GAGCGTGCAG AAGGTGCCTT TCCTCGGTGA CATCCCTATT TTAGGTCACC TGTTTAAGTC CTCTTCTAGC GGTAAGAAGA AGAAAAACCT CATGGTCTTC ATCAAGCCGA CCATCATACG CGATGGCGTG ACCATGGAAG GCATTGCCGG TCGTAAGTAC AACTACTTCC GTGCCCTGCA GCTCGAGCAG CAGGAACGTG GCGTGAACCT GATGCCAAAT ACCAGCGTGC CTATCCTGGA AGAGTGGAAT CAGGCAGAGT ACCTGCCGCC TGAAGTTAAC GAAGTGCTGC AGCGTTATAA GGATCGCAAG GGGTTAGACA CCAAGATGCG TGAAACCGAT CCTGCGCTGA AACAGATCAA CGAAAACAAG CAGCAAGATA AGCAAGATGA GTGA
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Protein sequence | MNNKKIRRNL IASVVMGASL LAPQVAWSEQ YAANFKGTDI QEFINIVGKN LNRTIIVDPT VRGKINVRSY DLLNDEQYYQ FFLNVLQVYG YAVVEMDNNI IKVIKDKDAK TSAIRVADDS TPGLGDEMVT RIVALYNTEA KQLAPLLRQL NDNAGGGNVV NYDPSNVLMI SGRAAVVNKL VEIVRRVDKQ GDTEVQVVPL EYASAGEMVR IIDTLYRASA NQSQLPGQAP KVVADERTNA VIVSGDEKSR QRVVALIKKL DAEQATTGNT KVRYLRYAKA EDLVEVLTGF AEKLAKDQEG GQAQGGRSKR RNEINIMAHP DTNALVISAE PDQMRTLESV INQLDIRRAQ VLVEAIIVEV AEGDDVGFGV QWATEAGGGT QFNNLGPTIG EIGAGIWAAQ DEKASNSCTG SGDNLTCTDN PDKKGDITLL AQALGKVNGM AWGVAMGDFG ALIQAVSSDT KSNVLATPSI TTLDNQEASF IVGDEVPVLT GSQNSSNGNS NPFQTVERKE VGVKLKVVPQ INEGTTVKLT IEQEVSGING KTGVDVTFAT RRLTTTVMAD SGQIVVLGGL INEEVQESVQ KVPFLGDIPI LGHLFKSSSS GKKKKNLMVF IKPTIIRDGV TMEGIAGRKY NYFRALQLEQ QERGVNLMPN TSVPILEEWN QAEYLPPEVN EVLQRYKDRK GLDTKMRETD PALKQINENK QQDKQDE
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