| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3588 |
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| Symbol | |
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| ID | 4922556 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4285833 |
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| End bp | 4287035 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640165210 |
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| Product | Bcr/CflA subfamily drug resistance transporter |
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| Protein accession | YP_001095713 |
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| Protein GI | 127514516 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTCGGA ACCTGTTACC CATACTCATG TTGATGGTGG TCTTGAGCCC ATTAGCCATC
GACATCTATC TGCCCTCTAT GCCCGTGATG GCGGCCGAAT TTGCCGTGTC GGCCAGTCAG
GTGCAGTCGA CGTTGGTACT GTTTCTGTTT GCCATGGGTG TCGGTCAGGT GCTGATCGGC
CCGCTGGCGG ATCGTTACGG TCGTCGTCCT ATAGCCCTGG GGGGCCTGCT GCTCTATATC
GCTAGTAGTC TGTTGGCTGC GGTGGCGATG GAGTTTCAAT GGCTGCAACT GGCGCGAGTG
CTGCAGGGGC TGGCAGCATG CTCAACCTCT ATCGTGGTCT TTAGCGCCGT CAGAGACTGT
TTCACTCCTA AAGAGGGTGC CCGCTACTAC AGCTATCTTA ACGGTGTGAT CTGCGTGATC
CCTGCTCTGG CGCCGACTCT GGGCGGCCTG CTGGCGCTGC AATTTGGCTG GCGATCCACC
TTCGTGTTTA TGACACTGTA CGCCATCATC ATAATGATCA TCGTCGGCTA TCGTCTGCCA
GAGACGCGTC CGGCCAACAC GGTTACCGAA GGGCCGCTCT ATCGCTGGTC GCGTTATAAA
CCTGTGCTGA TGGACCCGCA CTTTATGTTT TATGCCTTTG CCTGTATGGC GGGCATGGCG
GCGATTCTTG CCTATGTATC CTACTCGCCC GTGTGGCTTA TCGAGACAAT AGGCGTGTCC
GAGCTGACCT TTAGTGGCCT GTTCGGTCTC AATGCCCTGG TGAATATCGG CGCCTGTTTC
GCTGCGCCCG TGGTGATTCA GAAGCTGGGT AATCGCCCTA CCGTTATCGT CGCCCTGAGC
GCCATGTTGG TCTCGGCACT GCTGCAGCTT GCGGTGCAGT GGGCAGGCCC ACAGACCGGA
CTCGCGGCCG CCTTTGGCTT CATGCTGCCT ATGATGCTCT TGTGTATCGG TTTCGCCCTG
CTACTTGGTC CGGCGACCAG CATGGCCCTG GCGGGCTTTG GTGAGCGTGC CGGTACGGCC
ACCGCCATGC TTGGCTTCAT TCAGATGAGC GGCGCCTCGA TTCTGGCGGG TCTGGTACAG
CAGACTTCGC TGACCGCCCC CTACGCCGTA GTCGTCGTCA TGGGTGGCCT GGCGAGCCTA
CTGCTAGTTG CCATGAACAT GAGTCGACTA GACACCTGGC ACCAGGAGCG TCACGCCCAT
TGA
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| Protein sequence | MRRNLLPILM LMVVLSPLAI DIYLPSMPVM AAEFAVSASQ VQSTLVLFLF AMGVGQVLIG
PLADRYGRRP IALGGLLLYI ASSLLAAVAM EFQWLQLARV LQGLAACSTS IVVFSAVRDC
FTPKEGARYY SYLNGVICVI PALAPTLGGL LALQFGWRST FVFMTLYAII IMIIVGYRLP
ETRPANTVTE GPLYRWSRYK PVLMDPHFMF YAFACMAGMA AILAYVSYSP VWLIETIGVS
ELTFSGLFGL NALVNIGACF AAPVVIQKLG NRPTVIVALS AMLVSALLQL AVQWAGPQTG
LAAAFGFMLP MMLLCIGFAL LLGPATSMAL AGFGERAGTA TAMLGFIQMS GASILAGLVQ
QTSLTAPYAV VVVMGGLASL LLVAMNMSRL DTWHQERHAH
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