| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3070 |
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| Symbol | |
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| ID | 4922670 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3645607 |
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| End bp | 3646467 |
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| Gene Length | 861 bp |
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| Protein Length | 286 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640164680 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001095195 |
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| Protein GI | 127513998 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTCGTC TGGGCTGGCT GAAACAAATC TGGCGAGTAA TGAGCCTAGT CGTGGGGCTA
GCCTTGTGGC AGATGTTGCT CTGCGCCCAG GCCATGGCCA GCGACGGAGA GCGACATAGC
GAGCTGCATC AACTGCCGGC GATGGCGAAA ACGCCACTGA TTAGCGTGTC TAACGATTAT
CCGCCCTTCT ACTCGCCGCA GATGTCCGAG TGGGGCGTGG TGTACCACCT GGTGGAGGCG
GTATTTGAAC ATGCGGGATA TCCGCTGTCC CATGAGTTTT ACCCTTTTAT TCGCGCCCAA
ACGCTTATTA AGCGGGAGCT GGCGGATCTC ATCATAGGCG TATGGTATCG GCCCGAACGG
GAGCAGTGGA TCGACTTTTC CGACCCCTTG TTATCTGTCT CAATTCGCCT GTATAAGCGC
AGCGACAGCA AGATTGTCTT TCGCGATATC AAGGATCTCA AGCCCTATCT TATCGGTATC
GGCCGCGGCT ATGCCAACCC TGTGGCCTTC GGTCAAGCTA ACCTGAATAC CGAGGCCGCC
AGCTCAGATG CGGTGAACCT AAGGAAACTG CTGGCCGGTC GGGTGGATCT GGTGCTGATC
TGTGAGGATG TCGCCCGCTA CCTTATCGAA CGCCCCGGCA GCGAATATAA CGGTAAGCTT
GAGCCGGTGG GAGACCCTTT GAGCGTGGAG CTGTTTCATA TCGGGGTGGC CAAGCATCTT
CCTAATGCCC GGCAGATTTT AGCCGACTTT AACCAGAGCC TGGCTGAGCT GCATCGCAGC
GGCGAGCTGA CCAAGATTCT GGCCAGCCAT GGTTTCGAGC ACAACGCCTA TTGGCAGCAA
AAGTCGCAGA GCAGCCAATA G
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| Protein sequence | MSRLGWLKQI WRVMSLVVGL ALWQMLLCAQ AMASDGERHS ELHQLPAMAK TPLISVSNDY
PPFYSPQMSE WGVVYHLVEA VFEHAGYPLS HEFYPFIRAQ TLIKRELADL IIGVWYRPER
EQWIDFSDPL LSVSIRLYKR SDSKIVFRDI KDLKPYLIGI GRGYANPVAF GQANLNTEAA
SSDAVNLRKL LAGRVDLVLI CEDVARYLIE RPGSEYNGKL EPVGDPLSVE LFHIGVAKHL
PNARQILADF NQSLAELHRS GELTKILASH GFEHNAYWQQ KSQSSQ
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