| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3021 |
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| Symbol | |
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| ID | 4923072 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3586876 |
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| End bp | 3588537 |
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| Gene Length | 1662 bp |
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| Protein Length | 553 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640164631 |
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| Product | endonuclease I |
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| Protein accession | YP_001095146 |
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| Protein GI | 127513949 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG2356] Endonuclease I |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00455766 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATATGT ATAAGTTATC AACGGCTGCG TTAGTGGCTG GCCTGGCTTT CAATGCCAAT
GCCAATGCCA ATCTGCTGAT CAGCGAAGTG TTATACGATG CGCCCAACAA TGACAGCGTC
GAAGAGTATG TCGAGCTGTA TAACGCCGGC TGCAGCAGTA TCGACTTGAG TCAGTACCAG
CTCAGCGACA ACGGCAGCAG CCAGGCCTTG CAGGGCATGC TCGCCCCAGG CGCCTACTAT
ACGGTGGCGG CCAACCAGGC GGGTTTCTAC AGCCTGTTCA ACATCAATCC AGATCAATCT
CCCATGTCGT TAACTTTGGG TAACTCGGGT GACTTCGTGC GCCTGTCGAA GGGCAGCGAA
GAGGTGGATC TGGTCGCCTG GGAAGGCGGC CTGAGTGGCT GGTCGCTGAA TGTGCGCGAC
GTCTCTCTGG CACGAACCAC TGTGATCAAC ACTAAGTCAC AGGCCGACTG GAGCGCCATG
GATAACGCCG GCACGCCGGG CACGGGTAGC CTGGATAGCT GCGACACCTC CGCAGGTGGC
AGCGACAATC AGCTGGGCAA TGGTCAGCCA AAATCTGACC TTAACGCCGC CAAGGGGCTG
AGCCTCAGCT ACCTGTTCGA CCTTCCTCAA GGGGCGAGCG ATGTGGTGGT CACCATGAGT
GGTGGCACAG GGGATGCCGA TCTCTATCTG CGCCAGGGCA GCGAGCCTAC GCTGTCAGAG
TATGACTGTG CCCCTTATCT TACTGGCAAC AACGAGCAGT GCAGCGTCAC CACGCCTGTG
GTCGGGCGTT ACTATGTGAA CATCAATGCC TATGAGGCCT TTAGTGGCGT GTCGCTCAGC
CTAAGTTATA ACGTGGCGAG TGGCGGCGAT GGTTCTGGCT CTGGCGATGG TTCAGGTAGT
GGCTCGGGCA CTGGCGGTGA CGGCTCGGCC GGCGACAATG GCGATTATGT CTATACCAGC
TACTATGGCG ATGCGATAGG CAAAAGCGGC GCGGCGCTAA AGGCCAGCCT GAATGGGATC
ATTAAGGGCC ATACCCGTTT CAGCTATAGC CAGGTGTGGG ATGGACTTAA CTATGCCGAT
GAAGATCCGG CCAACAGCAA CAATGTGATC TTGCTGTACT CGGGCCGCTC TGAGCCTAAG
ACGAATCGGG CCGGATTGAG TACCTCACTT GATGCCTGGA ACCGTGAACA CGTCTGGGCC
AAGAGCCATG GCTTCCCTAG CAGCAGTCAG TATGCCTATA CCGACCTGCA TCACCTGCGT
CCGGCAGATG TTACGGTGAA CAGCAGCCGC AGCAACAAAG ACTTTGCCGC CGGCGGCGAT
GAGATCTCAG AGGCGCCGGG CAACTTTACT GATGCCGATA GCTTCGAGCC GCGCGATGAG
GTGAAGGGCG ATGTGGCGCG TATGGTGTTC TATATGGATG TCAGGTATGA GGGTAACGAT
GCCAGTGGCA CGCCGGATCT CAGCGTGGTG AGTGGTGTTA CCGGTAATGG TGAGGCTCTG
CTTGGAGATC TCTGTACCCT GTATCGCTGG CACCAGCAAG ATCCGGTCAG CGACTGGGAG
CGCCGCCGCA ACAACCGTGT GTTCGAGTGG CAGAAGAACC GTAATCCTTT CATCGACAAC
AGCAGTTGGG TGAGCGAGAT CTACGGCGCA TCTTGTCCCT AG
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| Protein sequence | MDMYKLSTAA LVAGLAFNAN ANANLLISEV LYDAPNNDSV EEYVELYNAG CSSIDLSQYQ
LSDNGSSQAL QGMLAPGAYY TVAANQAGFY SLFNINPDQS PMSLTLGNSG DFVRLSKGSE
EVDLVAWEGG LSGWSLNVRD VSLARTTVIN TKSQADWSAM DNAGTPGTGS LDSCDTSAGG
SDNQLGNGQP KSDLNAAKGL SLSYLFDLPQ GASDVVVTMS GGTGDADLYL RQGSEPTLSE
YDCAPYLTGN NEQCSVTTPV VGRYYVNINA YEAFSGVSLS LSYNVASGGD GSGSGDGSGS
GSGTGGDGSA GDNGDYVYTS YYGDAIGKSG AALKASLNGI IKGHTRFSYS QVWDGLNYAD
EDPANSNNVI LLYSGRSEPK TNRAGLSTSL DAWNREHVWA KSHGFPSSSQ YAYTDLHHLR
PADVTVNSSR SNKDFAAGGD EISEAPGNFT DADSFEPRDE VKGDVARMVF YMDVRYEGND
ASGTPDLSVV SGVTGNGEAL LGDLCTLYRW HQQDPVSDWE RRRNNRVFEW QKNRNPFIDN
SSWVSEIYGA SCP
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