| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2990 |
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| Symbol | |
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| ID | 4923791 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3548977 |
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| End bp | 3550947 |
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| Gene Length | 1971 bp |
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| Protein Length | 656 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640164600 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001095115 |
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| Protein GI | 127513918 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.235083 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTACAC AACCTAGTAA AATTGCGCTA CTGCTTGGCG CCTGTCTGGC CGGAAGCTTT
CCTGCCTTAG CGGAAAGTTC GGGCACCCCA GGGCCTGTGG ATGAAACTAT CACGGTTATC
GGCCGCACCG AAAACACCCC TATCAATATC GCGGCTAACG TCAATGTGAT CGACGCCGCC
GCCATCGAAC TCAGCGGTGC CACCAACCTC ACCGAGCTGC TGCGCGGACA GAGCGGCATT
CAGGTGTCAG ATTCAAACTC GGGTGCCGTG TTTGCCATGC GCGGTTTCAG TGCCAGTCAG
GCGGTCAACA ACACCTTGAT CCTGATCGAC GGTCGTCGTC TCAACAACAT CGATATCGCC
GCGCCGAGCA TTAGCGCCAT CGGGCTCAAT CAGGTGGAGC GAATCGAGAT CCTCTCAGGC
AGCGCCGGTG TGCTCTATGG TGACCAGGCG GTTGGCGGGG TGATCAACAT TATCACCAAG
GCGCCGAAAG ATAACGGCGG CAGCCTGCAG CTCTCCGGCG GCAGCTTCGA CACCTTTGAG
GCCAAGGCCG AGGGCTCGGT CGCCATCAAC GACAACTGGC GCCTCTATGG CGCGGCCAAC
CACCTCAAGA GCGATAACTA TCGCGATCAC AATGCCAGCA AGACCAGCTC AGTGCTGGGA
CGCCTGCAGT ATGACGATGA AGTGCAGCAG TTCTTGGCCG AGGCGAGTCA CTATGACAAC
CACCGCGAAC TGGCTGCTGC GCTGAATGAC GATCAGCTCA AGCAAAACCC AAGACAGATG
GGTGATCTGA AGCAAGGCGA TCTCTTTATC GATGCCTACC TGCATGAGAT GACCACGGCG
GCCCGCACCG GCTATCAGCG ACAGCTGAAT GAGGCCTGGG CACTGGGCGC CGACCTTAAC
TACAGCGACA CTCTGACAAC CGGGCTAAGC ACCTGGAACA CAAGCCGCCG CGATACCCGC
TCCCTGCTGG AGTTTAAGCC CAAGGCTGTG GCTAACATCA AGACGGATAT CGGCGAGCTT
AAGCTGGTGA CCGGTCTGGA TCTCAGCCGC GGCGAGGCGA CATTTAGCAA TCGCAGCAAT
GTGCAGAAGT TGGCCAGCGC CTATCTGCAG GCGACCGTGC CCCTCACCGA GAGCTTCAGC
TATGTGGTGG GCGGTCGTTA CGCCGAGGTG ACGGATGAAC TGGTGGACGC CAGTGCCTAC
CCTAATGGGA TCGATCTGGA TCAGGATGCC CATGCATTCG AGCTTGGCCT TAACTATCGC
CCGAGCCAGC AACATAGATT CTACCTGCGC GCCGACGATA ACTTCCGTTT CGCCAAGGTG
GATGAGCAGG CTTATACGCC AGAGAGCATT CAGGGACTTA AGCCGCAGAC GGGTCGCTCC
TACGAGGCGG GCTGGGATCT GCTGCTCGAG CGCAATACCC TGCGCCTGAG CGCCTATCGA
CTGGATCTCG AAGATGAGAT CGTCTTCGAT CCAAGCGCCG AGACACCTGC CGGTGGTAGT
TTTCCCGGCG CCAACGTGAA CGCCGATGCC TCGCGCCGTT ATGGGGTGAG CGCAGACTGG
GATTGGCAGG CGACTCAGGA TCTACTGCTT GGGCTTGAAT ATAACTACAT AGACGCCGAG
TTTACCGAAG GGGCTAACGA GGGTAAGGCG CTCTCCTGGG TGGCCAAGAA CACAGGTCGT
GGCTATGTCA GTTACGATGT TTATGAACAT CTGCAGCTCT TCGCCGAGGC GGTCTACACC
GGTGAGCGTT ACATGGAGGG TGACAATGCC AACCAGGGCG ATAAGCTCGA TGCCTATACC
CTTGCAAATA TCGCCATCAA CTATTCCCGC GATGCCTGGC TGGCCAGCCT GCGGGTCGAT
AACCTGCTGG ACAAGGAGTA TGTCAGCTCT GGGTATTTCA GCACCTGGGG TAGCGGTTAT
TATCCTGGTA CGGGCCGGGC GCTGCGCCTG ACTGCCAGCT ACCGCTTCTA A
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| Protein sequence | MGTQPSKIAL LLGACLAGSF PALAESSGTP GPVDETITVI GRTENTPINI AANVNVIDAA
AIELSGATNL TELLRGQSGI QVSDSNSGAV FAMRGFSASQ AVNNTLILID GRRLNNIDIA
APSISAIGLN QVERIEILSG SAGVLYGDQA VGGVINIITK APKDNGGSLQ LSGGSFDTFE
AKAEGSVAIN DNWRLYGAAN HLKSDNYRDH NASKTSSVLG RLQYDDEVQQ FLAEASHYDN
HRELAAALND DQLKQNPRQM GDLKQGDLFI DAYLHEMTTA ARTGYQRQLN EAWALGADLN
YSDTLTTGLS TWNTSRRDTR SLLEFKPKAV ANIKTDIGEL KLVTGLDLSR GEATFSNRSN
VQKLASAYLQ ATVPLTESFS YVVGGRYAEV TDELVDASAY PNGIDLDQDA HAFELGLNYR
PSQQHRFYLR ADDNFRFAKV DEQAYTPESI QGLKPQTGRS YEAGWDLLLE RNTLRLSAYR
LDLEDEIVFD PSAETPAGGS FPGANVNADA SRRYGVSADW DWQATQDLLL GLEYNYIDAE
FTEGANEGKA LSWVAKNTGR GYVSYDVYEH LQLFAEAVYT GERYMEGDNA NQGDKLDAYT
LANIAINYSR DAWLASLRVD NLLDKEYVSS GYFSTWGSGY YPGTGRALRL TASYRF
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