| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2952 |
|---|
| Symbol | |
|---|
| ID | 4923660 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3498055 |
|---|
| End bp | 3499680 |
|---|
| Gene Length | 1626 bp |
|---|
| Protein Length | 541 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640164562 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001095077 |
|---|
| Protein GI | 127513880 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000751538 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAATA TTCAAATCAA GCACAAGATG GCTTTCGGCA TCTTACTCCC CCTCTCGCTC
CTCATCTGTA TCTGCATCTT AGCAATCAAC ATGATGAATA ATATCGAGAA AGGTGTCGTC
ACCATCTATA ACGACAGAGT CGTTCCGCTA GAAGATCTTA AGGTGATCGC CGACGATTAC
GCGGTATTTG TCATCGATGC CATCAACAAG GCCAATGCCG GTGAGTTCAG CGCCGAACAG
GCCAATCAAG CCCTGCAGGA AGCAAGCAAC AACATAGACA GCAAATGGCG CCAATACGTC
GCCACCGAAC TCACCACGGA TGAGAAACGC TTGGTCGATG AGGCCGAGCG CCTGTTTGTT
CCGGCCAACC AGCGTATCAC CCATCTAGAA CAGCTGCTTG GGGGGAAGTC AGGTAATATT
GCCGGCCAGC TGCGGGAGGA GATTATCCCA CTCTACCGGG TGATCGATCC CATCAGCGGC
ACCATCGCCG AGCTGATCAG CCTGCAGCTC AAGGTCGCCG GCGAGGAGAA AGACAGGGTC
GCCGAGATCT ACGAGTCCTC TATCTCCCTC TTCATACTCA TCACCCTGGT GGCCGCCATT
GCCAGTATAG TGCTCGGCGT CTGGATCAAC CGCAGCGTAA TGAAACCCAT CAACCACATA
CGCACTCAGC TACATACCAT ACAGCAAGAC TCAGATCTCA CTGTCACCTT CGAGCAACTG
AATAAGGACG AGCTGGGGCT GATCTCCACC GGGCTCAACG ATGTCTTTCG CCACCTGCGC
GGCATCCTCA AAGGGGTCGC CGAGGCGGCC AATAGCGTTA GCGACTCTGC GTTAGCCCTT
AACGAGTTCA CCCAGATCTC TAACGCCCGC ATTCAACAGC AGCAGGCGGA GACAGAGCAG
ACCGCCACGG CCATGAATGA AATGACGGCA ACGGTTAACG AGGTAGCACA GAGCACCACG
GCCGCCGCCG ACTCGGCCAG AAATGCCGAC CGATTCGCCG CCAACGGTAA TGATATCGTC
CAGCTGTCGA TTAGCAGCAT GCAGGCGCTG TCGATGCAGA TCCAGAGCAC CTCAGAGGTG
ATCACCCACC TGTCCCACGA GAGCCAACAT ATCGGCAGCG TACTGAGCGT CATCAAGGGG
ATTGCCGAGC AGACCAACCT GCTGGCCCTC AACGCCGCTA TCGAGGCTGC CAGGGCCGGT
GAGCAGGGGC GCGGATTTGC CGTGGTCGCC GACGAGGTTC GCTCCCTCGC CCAGCGCACC
CAGGAGGCGA CCCAGGAGAT CGAGACCATG ATAGAGACGC TGCAGAGCGG GGTGAACGAG
GCGGTCACCG CCATGGATGT GGGCATTAAA CAGGTGGATG ATGCCAATCA ACAGACCAAC
AAGGCGGGGG AAGCGCTACA GGAGATAGTC GCCTCGGTCG ACAACATCAC AGAGATGAAC
ACCCATATCG CCACGGCGGC GGAGGAGCAG AGCAGTGTCG CCGAGAGCAT TAACCGCAGC
ATTATCGCCA TCAGCGATAT CGCCAGCCAG TCAACGGAAT CTGCCTTAGA GCTGGGTCAC
TCCATCGCTC AGCTCACCTC GCTGGCCGAC TCGATGCGGC AACAGGTCAC CACCTTCAGG
CTCTGA
|
|---|
| Protein sequence | MNNIQIKHKM AFGILLPLSL LICICILAIN MMNNIEKGVV TIYNDRVVPL EDLKVIADDY
AVFVIDAINK ANAGEFSAEQ ANQALQEASN NIDSKWRQYV ATELTTDEKR LVDEAERLFV
PANQRITHLE QLLGGKSGNI AGQLREEIIP LYRVIDPISG TIAELISLQL KVAGEEKDRV
AEIYESSISL FILITLVAAI ASIVLGVWIN RSVMKPINHI RTQLHTIQQD SDLTVTFEQL
NKDELGLIST GLNDVFRHLR GILKGVAEAA NSVSDSALAL NEFTQISNAR IQQQQAETEQ
TATAMNEMTA TVNEVAQSTT AAADSARNAD RFAANGNDIV QLSISSMQAL SMQIQSTSEV
ITHLSHESQH IGSVLSVIKG IAEQTNLLAL NAAIEAARAG EQGRGFAVVA DEVRSLAQRT
QEATQEIETM IETLQSGVNE AVTAMDVGIK QVDDANQQTN KAGEALQEIV ASVDNITEMN
THIATAAEEQ SSVAESINRS IIAISDIASQ STESALELGH SIAQLTSLAD SMRQQVTTFR
L
|
|---|
| |