| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2577 |
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| Symbol | |
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| ID | 4921065 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3036686 |
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| End bp | 3038260 |
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| Gene Length | 1575 bp |
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| Protein Length | 524 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640164171 |
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| Product | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor |
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| Protein accession | YP_001094702 |
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| Protein GI | 127513505 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAAACA ATCAACCCGT GATAGACAAC GAGGTCGTGC TGACCGACGA TGATATTCTG
CTGTCCACGA CGGATCTCAA GGGCAATATA GGTTATGCCA ATGAGGATTT TTGCCGTATC
TGTGGGTTTT CCGAGGAGGA ACTGGTTCGC CAGCCCCATA ACATTGTGCG CCATCCCGAC
ATGCCCAAGG CCGCCTTTGC CATCTTGTGG CAGCGTCTGG CGCAGAAGCA ATCCTGGCTG
GGGGTGGTGA AGAATCGCTG TAAAGATGGC TCCTACTACT GGGTCAATGC CTATGTGGCG
CCCGTGATGG AGAATGGTCA GGTCAAGGAG TATCAATCGG TGCGCCGCCG GGCGAGCCAG
GCCCAGGTAG AGCGTGCCAG CGATATCTAT CAGAGCCTTA ATAAGTCTGA GCAGCGCAGC
GAGATCAAGG ATGCCAAGCT CGGTTACGGC GGCAAGCTGA CCCTGTTTGC TGTTCTCTGT
TTGTTGCTGG CCATCGGCCT GAGTAATATC TCGCCCTGGT TGGCACTCAT CTGCGCGCCT
CTGTTGGCGA TTGGCATGAG GCTCCTCCTA GCACCGTTAC GGGCGCTGAA TGACCAAGCG
CTCACTATCG TATCAGACCC GGTTGCCAGA CACATCTATG CCGGGCGGCG GGACGAGCTG
GGCAACATTC AATTTGCCAT GGAGTTCACT ACGGCGGAGA TCGCCGGGGT AGTAGGGCGG
ATGACAGATG CCTCAAGCGT CATCGCCAGA GACAGCGACG CCTTGCTTGG CTCTATCACG
GCCACGGCGG ATCGCGCCGA TGGTCAGAAT CAACAGACGG CCCAGGCCGC GGCGGCTGTG
GAGGAGCTGA CCGCCAGCTT TAACGAGCTG GGTCAGCAGC TTAAGCAGGT GTCGGCGGAT
GTCGAGGCCA GCCAGGCGGC TGTGCTGCAG GGCTATGAGC AGCTCGATGC CGTGGTGGCC
AGCATAGATG AGCTTCATAA CGAAGTGGGC AACTTTGCCC AGGTGGTCAG CGAGATAGAG
CATGACAGCG TGGCCATCAA TCAGGTGCTT GAGGTGATCA CTAAGATTGC CGAGCAGACC
AACCTGCTGG CGCTTAACGC CGCCATCGAG GCGGCGCGGG CAGGGGAGTC GGGCCGGGGC
TTCGCCGTGG TGGCCGACGA GGTGCGCCAG CTGTCGGCGC GCACCGCAGA TTCCACCAGT
CAGATCGATG CCATCATCGC CAAGTTCCAG CAGAGTACGG CCAATGCGGC GAACACACTG
ACCGCAGGTC AGCGCCAGGC AACTCAGGCG GTGCAGCTGG TGAAACAAGC TGAGGCCGTG
TTTGCCGAGC TGGTGACCCG TATCGATAAG ATTAATCAGA TGACGGAGCT TAGCGCCGAT
GCCATGCAGG AGCAGGGACT GGCGGCGGTG GATATCAGCG ATTCGCTGCA GGCGATCAGC
GAGCTGGCCA GCGAAGGCTT TGCCCAGTCC CAGGCCGATA GACAGCTTGG CGAGCGCAGC
TCACTCAAGT CGATGGAGTC ACGCCAGCTA GCGCGTCAGT TCTGGCGTCA GGCGGTGCAT
CGCGCCAATG CTTAA
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| Protein sequence | MRNNQPVIDN EVVLTDDDIL LSTTDLKGNI GYANEDFCRI CGFSEEELVR QPHNIVRHPD
MPKAAFAILW QRLAQKQSWL GVVKNRCKDG SYYWVNAYVA PVMENGQVKE YQSVRRRASQ
AQVERASDIY QSLNKSEQRS EIKDAKLGYG GKLTLFAVLC LLLAIGLSNI SPWLALICAP
LLAIGMRLLL APLRALNDQA LTIVSDPVAR HIYAGRRDEL GNIQFAMEFT TAEIAGVVGR
MTDASSVIAR DSDALLGSIT ATADRADGQN QQTAQAAAAV EELTASFNEL GQQLKQVSAD
VEASQAAVLQ GYEQLDAVVA SIDELHNEVG NFAQVVSEIE HDSVAINQVL EVITKIAEQT
NLLALNAAIE AARAGESGRG FAVVADEVRQ LSARTADSTS QIDAIIAKFQ QSTANAANTL
TAGQRQATQA VQLVKQAEAV FAELVTRIDK INQMTELSAD AMQEQGLAAV DISDSLQAIS
ELASEGFAQS QADRQLGERS SLKSMESRQL ARQFWRQAVH RANA
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